RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PCID2Q5JVF3 399 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 WIPI1Q5MNZ9 446 aaPredicted RBP13.32□□□□□ -0.28
CLN3-249ENST00000636685 PIWIL4Q7Z3Z4 852 aaKnown RBP13.32□□□□□ -0.28
CLN3-249ENST00000636685 CLNKQ7Z7G1 428 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 SDCCAG8Q86SQ7 713 aaPredicted RBP13.32□□□□□ -0.28
CLN3-249ENST00000636685 PM20D2Q8IYS1 436 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 TMEM132CQ8N3T6 1108 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 TC2NQ8N9U0 490 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 IGFBPL1Q8WX77 278 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 OR8D2Q9GZM6 311 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 SPNS1Q9H2V7 528 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 HOMER3Q9NSC5 361 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 KLHL28Q9NXS3 571 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 SLC6A5Q9Y345 797 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 WIF1Q9Y5W5 379 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 CLCA3PQ9Y6N3 262 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 TRBC2A0A5B9 178 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 SNPHO15079 494 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 VAPBO95292 243 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 IFNA16P05015 189 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 F7P08709 466 aaPredicted RBP13.31□□□□□ -0.28
CLN3-249ENST00000636685 FAM157CP0CG43 387 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 SMIM10L1P0DMW3 83 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 SESN2P58004 480 aaPredicted RBP13.31□□□□□ -0.28
CLN3-249ENST00000636685 CCZ1BP86790 482 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 CCZ1P86791 482 aaPredicted RBP13.31□□□□□ -0.28
CLN3-249ENST00000636685 SRSF2Q01130 221 aaKnown RBP13.31□□□□□ -0.28
CLN3-249ENST00000636685 ASPHQ12797 758 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 RUNX2Q13950 521 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 VEZF1Q14119 521 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 SF3B4Q15427 424 aaKnown RBP eCLIP13.31□□□□□ -0.282e-7■■■■□ 24.8
CLN3-249ENST00000636685 PHKG1Q16816 387 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 ZNF791Q3KP31 576 aaPredicted RBP13.31□□□□□ -0.28
CLN3-249ENST00000636685 TTLL9Q3SXZ7 439 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 DCST1Q5T197 706 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 VASNQ6EMK4 673 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 MRNIPQ6NTE8 343 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 C11orf63Q6NUN7 778 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 AGTRAPQ6RW13 159 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 LCTLQ6UWM7 567 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 CES3Q6UWW8 571 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 SYDE1Q6ZW31 735 aaPredicted RBP13.31□□□□□ -0.28
CLN3-249ENST00000636685 PLEKHM3Q6ZWE6 761 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 ABHD11Q8NFV4 315 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 OR4K1Q8NGD4 311 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 PAQR8Q8TEZ7 354 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 PTPMT1Q8WUK0 201 aaPredicted RBP13.31□□□□□ -0.28
CLN3-249ENST00000636685 SMIM10Q96HG1 83 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 SGPP1Q9BX95 441 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 REG4Q9BYZ8 158 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 AICDAQ9GZX7 198 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 CALHM2Q9HA72 323 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 ZNF701Q9NV72 531 aaPredicted RBP13.31□□□□□ -0.28
CLN3-249ENST00000636685 ZNHIT6Q9NWK9 470 aaKnown RBP13.31□□□□□ -0.28
CLN3-249ENST00000636685 ZFP69BQ9UJL9 534 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 TFR2Q9UP52 801 aa13.31□□□□□ -0.28
CLN3-249ENST00000636685 E7EVH7 732 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 TRAPPC6AO75865 159 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 CRYGSP22914 178 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 LOXP28300 417 aaPredicted RBP13.3□□□□□ -0.28
CLN3-249ENST00000636685 SOX18P35713 384 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 CPOXP36551 454 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 MC3RP41968 323 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 SLCO1A2P46721 670 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 HSD17B7P56937 341 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 CLEC12BQ2HXU8 276 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 PIGGQ5H8A4 983 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 ZNF441Q8N8Z8 693 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 MORN4Q8NDC4 146 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 OR5L2Q8NGL0 311 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 TMEM171Q8WVE6 324 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 SLC44A1Q8WWI5 657 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 NTNG2Q96CW9 530 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 WDYHV1Q96HA8 205 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 SFXN3Q9BWM7 321 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 ADAMTS6Q9UKP5 1117 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 MED16Q9Y2X0 877 aa13.3□□□□□ -0.28
CLN3-249ENST00000636685 A0A0G2JN53 185 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 ACSL3O95573 720 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 FDFT1P37268 417 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 SCTRP47872 440 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 BTN3A2P78410 334 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 FAM27E3Q08E93 113 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 TOR1AIP1Q5JTV8 583 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 PLXDC2Q6UX71 529 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 LYPD8Q6UX82 237 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 STRA8Q7Z7C7 330 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 PRUNE1Q86TP1 453 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 FAM47BQ8NA70 645 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 OR8K3Q8NH51 312 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 SLC35B2Q8TB61 432 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 SLC2A12Q8TD20 617 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 DAZLQ92904 295 aaKnown RBP13.29□□□□□ -0.28
CLN3-249ENST00000636685 INTS12Q96CB8 462 aaKnown RBP13.29□□□□□ -0.28
CLN3-249ENST00000636685 MFSD3Q96ES6 412 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 MARK4Q96L34 752 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 TCF12Q99081 682 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 UGT2B28Q9BY64 529 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 AMBRA1Q9C0C7 1298 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 ZNF226Q9NYT6 803 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms