RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ASF1BQ9NVP2 202 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 C5AR2Q9P296 337 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 ERRFI1Q9UJM3 462 aaPredicted RBP16.77■□□□□ 0.28
CLN3-247ENST00000636351 SLC12A4Q9UP95 1085 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 TMEM120BA0PK00 339 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 H3BQF6 201 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 AGPSO00116 658 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 UBFD1O14562 309 aaKnown RBP16.76■□□□□ 0.27
CLN3-247ENST00000636351 B4GALT2O60909 372 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 DNAJB6O75190 326 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 ETHE1O95571 254 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 PDYNP01213 254 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 IL10P22301 178 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 JAK1P23458 1154 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 COL8A1P27658 744 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 AGBL2Q5U5Z8 902 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 HHATQ5VTY9 493 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 ZNF793Q6ZN11 406 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 PPP1R32Q7Z5V6 425 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 UBE3DQ7Z6J8 389 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 LAPTM4BQ86VI4 370 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 GALNT16Q8N428 558 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 CISD2Q8N5K1 135 aaKnown RBP16.76■□□□□ 0.27
CLN3-247ENST00000636351 FAM47BQ8NA70 645 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 MGARPQ8TDB4 240 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 METTL21AQ8WXB1 218 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 TLCD1Q96CP7 247 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 VPS50Q96JG6 964 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 CNDP1Q96KN2 507 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 FER1L6-AS2Q96M78 137 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 IP6K3Q96PC2 410 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 TRMOQ9BU70 441 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 SORBS1Q9BX66 1292 aaKnown RBP16.76■□□□□ 0.27
CLN3-247ENST00000636351 NPLQ9BXD5 320 aaPredicted RBP16.76■□□□□ 0.27
CLN3-247ENST00000636351 VN1R1Q9GZP7 353 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 VIPAS39Q9H9C1 493 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 CLK4Q9HAZ1 481 aaKnown RBP16.76■□□□□ 0.27
CLN3-247ENST00000636351 NKIRAS1Q9NYS0 192 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 FIS1Q9Y3D6 152 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 TIMM22Q9Y584 194 aa16.76■□□□□ 0.27
CLN3-247ENST00000636351 ESPL1Q14674 2120 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 MASP2O00187 686 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 PLPP1O14494 284 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 NPHS1O60500 1241 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 ULK1O75385 1050 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 ALPPP05187 535 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 ACPPP15309 386 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 HIST1H1TP22492 207 aaPredicted RBP16.75■□□□□ 0.27
CLN3-247ENST00000636351 ATP5A1P25705 553 aaKnown RBP16.75■□□□□ 0.27
CLN3-247ENST00000636351 HTR6P50406 440 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 RAB38P57729 211 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 CUL3Q13618 768 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 RUNX2Q13950 521 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 RCN2Q14257 317 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 MYBPC3Q14896 1274 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 TUBB8Q3ZCM7 444 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 DCAF10Q5QP82 559 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 ZNF787Q6DD87 383 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 OR4C11Q6IEV9 310 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 CUZD1Q86UP6 607 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 ACOT4Q8N9L9 421 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 CLEC1AQ8NC01 280 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 ADAMTS18Q8TE60 1221 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 ARL8AQ96BM9 186 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 BRF2Q9HAW0 419 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 EML4Q9HC35 981 aaKnown RBP16.75■□□□□ 0.27
CLN3-247ENST00000636351 PRDM7Q9NQW5 492 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 P4HTMQ9NXG6 502 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 FBXL4Q9UKA2 621 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 PPT2Q9UMR5 302 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 B3GNT3Q9Y2A9 372 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 HS3ST3B1Q9Y662 390 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 SPACA6W5XKT8 324 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 DOPEY1Q5JWR5 2465 aa16.75■□□□□ 0.27
CLN3-247ENST00000636351 ALOX12BO75342 701 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 SEMA3DO95025 777 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 CBX6O95503 412 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 CLDN1O95832 211 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 C8orf89P0DMQ9 161 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 FOXA1P55317 472 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 EEF1A2Q05639 463 aaKnown RBP16.74■□□□□ 0.27
CLN3-247ENST00000636351 ABRAXAS2Q15018 415 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 CHI3L2Q15782 390 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 CYP20A1Q6UW02 462 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 SCIMPQ6UWF3 145 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 MAMDC2Q7Z304 686 aaPredicted RBP16.74■□□□□ 0.27
CLN3-247ENST00000636351 NUDT13Q86X67 352 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 C8orf44Q96CB5 159 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 MRPL1Q9BYD6 325 aaKnown RBP16.74■□□□□ 0.27
CLN3-247ENST00000636351 ILKAPQ9H0C8 392 aaPredicted RBP16.74■□□□□ 0.27
CLN3-247ENST00000636351 ACBD3Q9H3P7 528 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 NMRK1Q9NWW6 199 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 PSD3Q9NYI0 1048 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 AHSPQ9NZD4 102 aa16.74■□□□□ 0.27
CLN3-247ENST00000636351 MRPS33Q9Y291 106 aaKnown RBP16.74■□□□□ 0.27
CLN3-247ENST00000636351 ARHGAP10A1A4S6 786 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 OR2W5A6NFC9 320 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 FAM227AF5H4B4 570 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 SOCS6O14544 535 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 BIRC5O15392 142 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms