RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 GPLD1P80108 840 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 GPR33Q49SQ1 333 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 MTFR2Q6P444 385 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 ZNF613Q6PF04 617 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 OXR1Q8N573 874 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 ARL14EPQ8N8R7 260 aaPredicted RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 GDPD1Q8N9F7 314 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 OR10H4Q8NGA5 316 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 OR8J1Q8NGP2 316 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 ZNF566Q969W8 418 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 EPYCQ99645 322 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 SPATA9Q9BWV2 254 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 TTTY10Q9BZA0 68 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 TMEM45AQ9NWC5 275 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 SLC25A13Q9UJS0 675 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 PCDHGB1Q9Y5G3 927 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 STX11O75558 287 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 NCR1O76036 304 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 TSPAN12O95859 305 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 IFNA7P01567 189 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 IGFBP1P08833 259 aaPredicted RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 AMD1P17707 334 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 DDOSTP39656 456 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 P2RX3P56373 397 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 ADAM15Q13444 863 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 PIN1Q13526 163 aaPredicted RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 LRRC32Q14392 662 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 IHHQ14623 411 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 ZNF767PQ75MW2 155 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 PDZD3Q86UT5 571 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 GANCQ8TET4 914 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 CIDECQ96AQ7 238 aaPredicted RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 MYEOVQ96EZ4 313 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 MED30Q96HR3 178 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 BAIAP2Q9UQB8 552 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 AHDC1Q5TGY3 1603 aaPredicted RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 OR6C75A6NL08 312 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 PDPK1O15530 556 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 ALDH1A1P00352 501 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 DRD5P21918 477 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 ALAS2P22557 587 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 HOXD9P28356 352 aaPredicted RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 RPL3P39023 403 aaKnown RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 AP2S1P53680 142 aaPredicted RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 SLC3A1Q07837 685 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 ZNF791Q3KP31 576 aaPredicted RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 GPRC6AQ5T6X5 926 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 LYPD8Q6UX82 237 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 SERPINA13PQ6UXR4 307 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 OTOP2Q7RTS6 562 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 NATD1Q8N6N6 113 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 SYT14Q8NB59 555 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 TP53I13Q8NBR0 393 aaPredicted RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 PMEPA1Q969W9 287 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 ZIC5Q96T25 663 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 NUDT15Q9NV35 164 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 NDUFAF4Q9P032 175 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 C5AR2Q9P296 337 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 NFKBIL1Q9UBC1 381 aaPredicted RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 FBXO10Q9UK96 956 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 YARS2Q9Y2Z4 477 aaKnown RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 ENPP4Q9Y6X5 453 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 TRIM64A6NGJ6 449 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 WASH4PA8MWX3 477 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 E7EQ34 232 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 CAPN5O15484 640 aaPredicted RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 GASTP01350 101 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 URODP06132 367 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 PTPN2P17706 415 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 DNASE1P24855 282 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 ACRV1P26436 265 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 EVI2BP34910 448 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 TGFBR2P37173 567 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 CDH11P55287 796 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 HOXC5Q00444 222 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 VEZF1Q14119 521 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 KCNA10Q16322 511 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 ZNF697Q5TEC3 545 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 LAIR2Q6ISS4 152 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 MAP6Q96JE9 813 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 HYLS1Q96M11 299 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 QRFPRQ96P65 431 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 NTMT1Q9BV86 223 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 ELAC1Q9H777 363 aaKnown RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 TMEM39AQ9NV64 488 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 FBXL12Q9NXK8 326 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 PEX11BO96011 259 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 HLA-DPB1P04440 258 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 RLN1P04808 185 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 HOXC13P31276 330 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 DGKGP49619 791 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 HNMTP50135 292 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 KCNC4Q03721 635 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 ZNF91Q05481 1191 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 FAM209AQ5JX71 171 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 LAIR1Q6GTX8 287 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 REEP3Q6NUK4 255 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 TOMM5Q8N4H5 51 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 TEX26Q8N6G2 289 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 156.2 ms