RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RUVBL2Q9Y230 463 aaKnown RBP1.72□□□□□ -2.13
SCN1A-208ENST00000625916 TRPV2Q9Y5S1 764 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 IGHV3-35A0A0C4DH35 117 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 FAM231BA6NCW3 169 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 ERVV-1B6SEH8 477 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 NEDD8-MDP1E9PL57 170 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 ADAM20O43506 726 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 LRP3O75074 770 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 FGF19O95750 216 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 STARD3NLO95772 234 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 TRPC1P48995 793 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 PPA1Q15181 289 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 MAPRE1Q15691 268 aaKnown RBP1.71□□□□□ -2.14
SCN1A-208ENST00000625916 ARMC4Q5T2S8 1044 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 AGBL2Q5U5Z8 902 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 GPR139Q6DWJ6 353 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 SLC27A4Q6P1M0 643 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 APOBEC3FQ8IUX4 373 aaKnown RBP1.71□□□□□ -2.14
SCN1A-208ENST00000625916 H1FOOQ8IZA3 346 aaPredicted RBP1.71□□□□□ -2.14
SCN1A-208ENST00000625916 CEND1Q8N111 149 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 SLC43A2Q8N370 569 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 POGLUT1Q8NBL1 392 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 CLEC1AQ8NC01 280 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 FAM122AQ96E09 287 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 LINC00615Q96LM1 132 aaPredicted RBP1.71□□□□□ -2.14
SCN1A-208ENST00000625916 LRRC3BQ96PB8 259 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 TECTBQ96PL2 329 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 TRIM7Q9C029 511 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 FN3KQ9H479 309 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 ABCC13Q9NSE7 274 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 RAB26Q9ULW5 256 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 FAM169AQ9Y6X4 670 aa1.71□□□□□ -2.14
SCN1A-208ENST00000625916 HIVEP2P31629 2446 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 SPRR5A0A1B0GTR4 108 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF724A8MTY0 619 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 PRSS46E5RG02 174 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 TADA2AO75478 443 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 CA11O75493 328 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 PGM3O95394 542 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 HSD17B1P14061 328 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 ACAT1P24752 427 aaKnown RBP1.7□□□□□ -2.14
SCN1A-208ENST00000625916 MC5RP33032 325 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 CASP2P42575 452 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 CAPZA2P47755 286 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 P2RY4P51582 365 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 GNB2P62879 340 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 ALCAMQ13740 583 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 RASA2Q15283 850 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 TGIF1Q15583 401 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 C14orf28Q4W4Y0 310 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 C9orf152Q5JTZ5 239 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 CFAP58Q5T655 872 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 C17orf107Q6ZR85 190 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 GPR141Q7Z602 305 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 NRARPQ7Z6K4 114 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 ELMOD1Q8N336 334 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 C14orf178Q8N769 122 aaPredicted RBP1.7□□□□□ -2.14
SCN1A-208ENST00000625916 CD99L2Q8TCZ2 262 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 NTNG2Q96CW9 530 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 CASD1Q96PB1 797 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 NUDT16L1Q9BRJ7 211 aaKnown RBP1.7□□□□□ -2.14
SCN1A-208ENST00000625916 CHMP4AQ9BY43 222 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 IKZF5Q9H5V7 419 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 NT5DC2Q9H857 520 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 PATZ1Q9HBE1 687 aaKnown RBP1.7□□□□□ -2.14
SCN1A-208ENST00000625916 TMEM9Q9P0T7 183 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 MORF4L1Q9UBU8 362 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 KLHL21Q9UJP4 597 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 MEGF6O75095 1541 aa1.7□□□□□ -2.14
SCN1A-208ENST00000625916 ZNFX1Q9P2E3 1918 aaKnown RBP1.7□□□□□ -2.14
SCN1A-208ENST00000625916 IGLV3-16A0A075B6K0 115 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 TRBC2A0A5B9 178 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 OR5H15A6NDH6 313 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 EFCAB7A8K855 629 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF732B4DXR9 585 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 NPIPA3F8WFD2 350 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 B4GAT1O43505 415 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 AHCYL1O43865 530 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 PSMD10O75832 226 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 PRAMEF12O95522 483 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 NR2F1P10589 423 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 P4HA1P13674 534 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 RPA1P27694 616 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 PPP2R1BP30154 601 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 ID1P41134 155 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 IFI35P80217 286 aaPredicted RBP1.69□□□□□ -2.14
SCN1A-208ENST00000625916 PRPF4BQ13523 1007 aaKnown RBP1.69□□□□□ -2.14
SCN1A-208ENST00000625916 XKR4Q5GH76 650 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 OTPQ5XKR4 325 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 GCNT7Q6ZNI0 430 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF671Q8TAW3 534 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 HDAC11Q96DB2 347 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 C16orf74Q96GX8 76 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 VSIG2Q96IQ7 327 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 OR5M11Q96RB7 305 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 SERINC2Q96SA4 455 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 C5orf66Q9H5L9 145 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 SPG21Q9NZD8 308 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 NEU3Q9UQ49 428 aa1.69□□□□□ -2.14
SCN1A-208ENST00000625916 CDC42BPBQ9Y5S2 1711 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms