RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 DUSP12Q9UNI6 340 aa14.97□□□□□ -0.01
CPSF1-213ENST00000620219 MRPS33Q9Y291 106 aaKnown RBP14.97□□□□□ -0.01
CPSF1-213ENST00000620219 KIAA1671Q9BY89 1806 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 TCRBV3S1A0A5B6 114 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 C1QCP02747 245 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 CD27P26842 260 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 CDH12P55289 794 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 RPS15AP62244 130 aaKnown RBP14.96□□□□□ -0.01
CPSF1-213ENST00000620219 PRR5P85299 388 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 ZNF750Q32MQ0 723 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 LCN8Q6JVE9 175 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 MMABQ96EY8 250 aaPredicted RBP14.96□□□□□ -0.01
CPSF1-213ENST00000620219 MS4A8Q9BY19 250 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 PCDHB3Q9Y5E6 796 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 ASXL3Q9C0F0 2248 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 C8BP07358 591 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 RUNDC3AQ59EK9 446 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 CCDC81Q6ZN84 652 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.96□□□□□ -0.01
CPSF1-213ENST00000620219 ANKRD53Q8N9V6 530 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 MSANTD3Q96H12 275 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 HSH2DQ96JZ2 352 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 NR1H4Q96RI1 486 aaPredicted RBP14.96□□□□□ -0.01
CPSF1-213ENST00000620219 IMPAD1Q9NX62 359 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 KLHL28Q9NXS3 571 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 PCDHGB5Q9Y5G0 923 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 SNX5Q9Y5X3 404 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 ARHGEF17Q96PE2 2063 aaPredicted RBP14.96□□□□□ -0.01
CPSF1-213ENST00000620219 KIR2DS5A0A0G2JLQ3 304 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 A0A0G2JNG1 304 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 TRBC2A0A5B9 178 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 H3BN98 237 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 KIR2DS3K7RE56 304 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 OR12D1P0DN82 309 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 RPS9P46781 194 aaKnown RBP14.96□□□□□ -0.01
CPSF1-213ENST00000620219 SHC2P98077 582 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 KIR2DS5Q14953 304 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 NDUFA9Q16795 377 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 FAAH2Q6GMR7 532 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 OXR1Q8N573 874 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 CHTF18Q8WVB6 975 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 RELTQ969Z4 430 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 ZUFSPQ96AP4 578 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 DPYSL5Q9BPU6 564 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 MAU2Q9Y6X3 613 aa14.96□□□□□ -0.01
CPSF1-213ENST00000620219 TNFAIP8O95379 198 aa14.96□□□□□ -0.02
CPSF1-213ENST00000620219 RRM2P31350 389 aa14.96□□□□□ -0.02
CPSF1-213ENST00000620219 CCR4P51679 360 aa14.96□□□□□ -0.02
CPSF1-213ENST00000620219 GBX1Q14549 363 aa14.96□□□□□ -0.02
CPSF1-213ENST00000620219 KIR2DS3Q14952 304 aa14.96□□□□□ -0.02
CPSF1-213ENST00000620219 P3H2Q8IVL5 708 aa14.96□□□□□ -0.02
CPSF1-213ENST00000620219 GJD3Q8N144 294 aa14.96□□□□□ -0.02
CPSF1-213ENST00000620219 ZNF607Q96SK3 696 aa14.96□□□□□ -0.02
CPSF1-213ENST00000620219 ADI1Q9BV57 179 aa14.96□□□□□ -0.02
CPSF1-213ENST00000620219 RHCGQ9UBD6 479 aa14.96□□□□□ -0.02
CPSF1-213ENST00000620219 FOXE1O00358 373 aaPredicted RBP14.95□□□□□ -0.02
CPSF1-213ENST00000620219 AQP9O43315 295 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 SERPINB7O75635 380 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 SNAP29O95721 258 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 ALOX12P18054 663 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 PTNP21246 168 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 KDELR2P33947 212 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 SMU1Q2TAY7 513 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 C6orf120Q7Z4R8 191 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 TMEM102Q8N9M5 508 aaPredicted RBP14.95□□□□□ -0.02
CPSF1-213ENST00000620219 OSBPL11Q9BXB4 747 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.95□□□□□ -0.02
CPSF1-213ENST00000620219 EHD1Q9H4M9 534 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 PCDHGA2Q9Y5H1 932 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 C7orf72A4D263 438 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 TNFRSF10CO14798 259 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 GMFGO60234 142 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 BMP10O95393 424 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 HIST1H1TP22492 207 aaPredicted RBP14.95□□□□□ -0.02
CPSF1-213ENST00000620219 C18orf63Q68DL7 685 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 HMBOX1Q6NT76 420 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 CYP4Z1Q86W10 505 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 DPP10Q8N608 796 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 OR2L5Q8NG80 312 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 TESCQ96BS2 214 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 BTBD9Q96Q07 612 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 ABCD2Q9UBJ2 740 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 SPTY2D1-AS1A0A0U1RR47 76 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 KRBA1A5PL33 1030 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 CLEC3AO75596 197 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 HRH2P25021 359 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 SERPINB1P30740 379 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 RACK1P63244 317 aaKnown RBP14.95□□□□□ -0.02
CPSF1-213ENST00000620219 SRSF5Q13243 272 aaKnown RBP14.95□□□□□ -0.02
CPSF1-213ENST00000620219 SLC35C2Q9NQQ7 365 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 LRIT1Q9P2V4 623 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 ATP6V1HQ9UI12 483 aa14.95□□□□□ -0.02
CPSF1-213ENST00000620219 H0YGG7 62 aa14.94□□□□□ -0.02
CPSF1-213ENST00000620219 SGK494L7N484 410 aa14.94□□□□□ -0.02
CPSF1-213ENST00000620219 DYRK3O43781 588 aa14.94□□□□□ -0.02
CPSF1-213ENST00000620219 LDB3O75112 727 aa14.94□□□□□ -0.02
CPSF1-213ENST00000620219 GNAO1P09471 354 aa14.94□□□□□ -0.02
CPSF1-213ENST00000620219 ARF3P61204 181 aaPredicted RBP14.94□□□□□ -0.02
CPSF1-213ENST00000620219 KIAA0040Q15053 153 aa14.94□□□□□ -0.02
CPSF1-213ENST00000620219 NEDD8Q15843 81 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms