RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CMTM7Q96FZ5 175 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 KCNJ15Q99712 375 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 PPP1R3EQ9H7J1 279 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 GALNT9Q9HCQ5 603 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 THSD1Q9NS62 852 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 RLIMQ9NVW2 624 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 TMEM161AQ9NX61 479 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 COQ3Q9NZJ6 369 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 ZMAT5Q9UDW3 170 aaKnown RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 NCKAP1Q9Y2A7 1128 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 RPL36Q9Y3U8 105 aaKnown RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 MRPL42Q9Y6G3 142 aaKnown RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 RNF215Q9Y6U7 377 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 QSOX1O00391 747 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 SCAMP3O14828 347 aaKnown RBP10.35□□□□□ -0.75
UPF3A-212ENST00000619079 PCDH17O14917 1159 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 TAPBPO15533 448 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 CLDN9O95484 217 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 EOMESO95936 686 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 ADRA2AP08913 450 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 ICAM2P13598 275 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 GLULP15104 373 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 SSTR4P31391 388 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 MC4RP32245 332 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 TGM4P49221 684 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 CCT3P49368 545 aaKnown RBP10.35□□□□□ -0.75
UPF3A-212ENST00000619079 B2MP61769 119 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 EXOC3L2Q2M3D2 409 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 PAN2Q504Q3 1202 aaKnown RBP10.35□□□□□ -0.75
UPF3A-212ENST00000619079 PSAPL1Q6NUJ1 521 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 GLB1LQ6UWU2 654 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 TMEM107Q6UX40 140 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF730Q6ZMV8 503 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 PIANPQ8IYJ0 282 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 TMEM145Q8NBT3 493 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 C11orf65Q8NCR3 313 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 OR7G3Q8NG95 312 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 OR4A15Q8NGL6 344 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 TMEM163Q8TC26 289 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 RADILQ96JH8 1075 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 SORCS2Q96PQ0 1159 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 NELL2Q99435 816 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 SOSTQ9BQB4 213 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 DPH2Q9BQC3 489 aaPredicted RBP10.35□□□□□ -0.75
UPF3A-212ENST00000619079 TMEM184CQ9NVA4 438 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 GLS2Q9UI32 602 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 ADAM30Q9UKF2 790 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 PCDHB11Q9Y5F2 797 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 CDH10Q9Y6N8 788 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 RPS10-NUDT3A0A1W2PQS6 291 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 MEIS3P2A8K0S8 358 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 LOC730098B7Z3J9 87 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 NPIPB8E9PQR5 432 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 M0R129 80 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 CHP2O43745 196 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 GUCA1CO95843 209 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 ANXA3P12429 323 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 CKMT1AP12532 417 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 APEX1P27695 318 aaKnown RBP10.35□□□□□ -0.75
UPF3A-212ENST00000619079 CRISP1P54107 249 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 YBEYP58557 167 aaPredicted RBP10.35□□□□□ -0.75
UPF3A-212ENST00000619079 SERINC3Q13530 473 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 ZRANB3Q5FWF4 1079 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 TMEM201Q5SNT2 666 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 PRPF38BQ5VTL8 546 aaKnown RBP10.35□□□□□ -0.75
UPF3A-212ENST00000619079 CNIH2Q6PI25 160 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 BBS7Q8IWZ6 715 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 FAM217AQ8IXS0 508 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 ANKRD53Q8N9V6 530 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 LILRB1Q8NHL6 650 aaPredicted RBP10.35□□□□□ -0.75
UPF3A-212ENST00000619079 RBPMSQ93062 196 aaKnown RBP10.35□□□□□ -0.75
UPF3A-212ENST00000619079 RNF39Q9H2S5 420 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 SLC28A3Q9HAS3 691 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 FTSJ1Q9UET6 329 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 RAB23Q9ULC3 237 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 GSTK1Q9Y2Q3 226 aa10.35□□□□□ -0.75
UPF3A-212ENST00000619079 CIB4A0PJX0 185 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 FAM170BA6NMN3 283 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 HOXA2O43364 376 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 LZTS3O60299 673 aaPredicted RBP10.34□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF623O75123 536 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 GJB5O95377 273 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 DHFRP00374 187 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 CPEP16870 476 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 ZP3P21754 424 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 STOMP27105 288 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 BMP8BP34820 402 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 STK19P49842 368 aaPredicted RBP10.34□□□□□ -0.75
UPF3A-212ENST00000619079 CDKN1CP49918 316 aaPredicted RBP10.34□□□□□ -0.75
UPF3A-212ENST00000619079 ATP12AP54707 1039 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 POU4F3Q15319 338 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF284Q2VY69 593 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.34□□□□□ -0.75
UPF3A-212ENST00000619079 LIPKQ5VXJ0 399 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 TIGD4Q8IY51 512 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF683Q8IZ20 524 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 SELENOMQ8WWX9 145 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 FAM193BQ96PV7 902 aaPredicted RBP10.34□□□□□ -0.75
UPF3A-212ENST00000619079 FAM129BQ96TA1 746 aa10.34□□□□□ -0.75
UPF3A-212ENST00000619079 ELOVL6Q9H5J4 265 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms