RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 CLDN4O14493 209 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 RAD1O60671 282 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 PRMT3O60678 531 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 BMP10O95393 424 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 FHP07954 510 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 IL3P08700 152 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 DDX5P17844 614 aaKnown RBP13.87□□□□□ -0.19
CD48-203ENST00000613788 PRPS1L1P21108 318 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 JAK1P23458 1154 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 RPL3P39023 403 aaKnown RBP13.87□□□□□ -0.19
CD48-203ENST00000613788 CLDN8P56748 225 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 SHC2P98077 582 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 TNFRSF17Q02223 184 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 KLC1Q07866 573 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 FAM71E1Q6IPT2 247 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 FAM199XQ6PEV8 388 aaPredicted RBP13.87□□□□□ -0.19
CD48-203ENST00000613788 MED25Q71SY5 747 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 COX15Q7KZN9 410 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 ZNF595Q8IYB9 648 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 STARD8Q92502 1023 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 MIEF2Q96C03 454 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 EGLN2Q96KS0 407 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 FAM117AQ9C073 453 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 SLC26A1Q9H2B4 701 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 AKIRIN1Q9H9L7 192 aaPredicted RBP13.87□□□□□ -0.19
CD48-203ENST00000613788 C14orf105Q9NVL8 296 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 TEX10Q9NXF1 929 aaPredicted RBP13.87□□□□□ -0.19
CD48-203ENST00000613788 NXT1Q9UKK6 140 aaKnown RBP13.87□□□□□ -0.19
CD48-203ENST00000613788 PSME2Q9UL46 239 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 PCDHA9Q9Y5H5 950 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 DCHS1Q96JQ0 3298 aa13.87□□□□□ -0.19
CD48-203ENST00000613788 CCDC22O60826 627 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 NR2F6P10588 404 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 TCN2P20062 427 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 ATP4BP51164 291 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 CBX1P83916 185 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 PTGR1Q14914 329 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 PDCD4Q53EL6 469 aaKnown RBP13.86□□□□□ -0.19
CD48-203ENST00000613788 VWA2Q5GFL6 755 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 C18orf63Q68DL7 685 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 LCN10Q6JVE6 187 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 R3HCC1LQ7Z5L2 792 aaKnown RBP13.86□□□□□ -0.19
CD48-203ENST00000613788 CLNKQ7Z7G1 428 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 CACNA2D3Q8IZS8 1091 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 MIER2Q8N344 545 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 FAM47BQ8NA70 645 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 CLHC1Q8NHS4 586 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 STT3BQ8TCJ2 826 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 TANKQ92844 425 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 MTERF3Q96E29 417 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 MARK4Q96L34 752 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 PRPF18Q99633 342 aaKnown RBP13.86□□□□□ -0.19
CD48-203ENST00000613788 DPY30Q9C005 99 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 RPF2Q9H7B2 306 aaKnown RBP13.86□□□□□ -0.19
CD48-203ENST00000613788 WDR54Q9H977 334 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 MIEF1Q9NQG6 463 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 SDR39U1Q9NRG7 319 aaPredicted RBP13.86□□□□□ -0.19
CD48-203ENST00000613788 SCN3AQ9NY46 2000 aa13.86□□□□□ -0.19
CD48-203ENST00000613788 VSTM2BA6NLU5 285 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 FAM227AF5H4B4 570 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 AKAP10O43572 662 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 LRATO95237 230 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 AIFM1O95831 613 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 RAB40ALP0C0E4 278 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 ZGLP1P0C6A0 271 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 DDCP20711 480 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 PPP2R1BP30154 601 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 HPCAL1P37235 193 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 ALDH9A1P49189 494 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 MRPL19P49406 292 aaKnown RBP13.85□□□□□ -0.19
CD48-203ENST00000613788 C21orf58P58505 322 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 ACTN3Q08043 901 aaPredicted RBP13.85□□□□□ -0.19
CD48-203ENST00000613788 ERV3-1Q14264 604 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 SQLEQ14534 574 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 NKG7Q16617 165 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 TBC1D25Q3MII6 688 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 MRPL14Q6P1L8 145 aaKnown RBP13.85□□□□□ -0.19
CD48-203ENST00000613788 DTX1Q86Y01 620 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 CPSF7Q8N684 471 aaKnown RBP13.85□□□□□ -0.19
CD48-203ENST00000613788 ANKS4BQ8N8V4 417 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 CCDC197Q8NCU1 140 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 C7orf57Q8NEG2 295 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 GFM2Q969S9 779 aaKnown RBP13.85□□□□□ -0.19
CD48-203ENST00000613788 ZBTB18Q99592 522 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 REEP4Q9H6H4 257 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 TMEM45AQ9NWC5 275 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 EHD3Q9NZN3 535 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 ZIM2Q9NZV7 527 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 CTSFQ9UBX1 484 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 COPG1Q9Y678 874 aaKnown RBP13.85□□□□□ -0.19
CD48-203ENST00000613788 C21orf140B9A014 251 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 B4GALT2O60909 372 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 CTNSO60931 367 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 SLC22A3O75751 556 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 LIPCP11150 499 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 STAT5AP42229 794 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 CLNS1AP54105 237 aaKnown RBP13.85□□□□□ -0.19
CD48-203ENST00000613788 HSD17B7P56937 341 aa13.85□□□□□ -0.19
CD48-203ENST00000613788 RPS15P62841 145 aaKnown RBP13.85□□□□□ -0.19
CD48-203ENST00000613788 MC1RQ01726 317 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms