RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TMEM71Q6P5X7 295 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 GPR155Q7Z3F1 870 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 VPS37AQ8NEZ2 397 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 C10orf90Q96M02 699 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 COL25A1Q9BXS0 654 aaPredicted RBP13.5□□□□□ -0.25
USP39-220ENST00000613444 OTOGLQ3ZCN5 2332 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 FITM1A5D6W6 292 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 TXNDC9O14530 226 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 C6orf47O95873 294 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 ZCCHC18P0CG32 403 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 GSK3BP49841 420 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 SEPHS1P49903 392 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 LIM2P55344 173 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 EEFSECP57772 596 aaKnown RBP13.49□□□□□ -0.25
USP39-220ENST00000613444 LRRC74AQ0VAA2 488 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 CCNIQ14094 377 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 FXNQ16595 210 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 SNAP47Q5SQN1 464 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 C10orf111Q8N326 155 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 DTWD1Q8N5C7 304 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 IFI44Q8TCB0 444 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 ASB9Q96DX5 294 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 FAIM2Q9BWQ8 316 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 NLNQ9BYT8 704 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 PCDHAC1Q9H158 963 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 LRRN3Q9H3W5 708 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 ALG2Q9H553 416 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 ZNF768Q9H5H4 540 aaKnown RBP13.49□□□□□ -0.25
USP39-220ENST00000613444 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.49□□□□□ -0.25
USP39-220ENST00000613444 DAPP1Q9UN19 280 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 USP22Q9UPT9 525 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 NAALAD2Q9Y3Q0 740 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 GMEB1Q9Y692 573 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 COL27A1Q8IZC6 1860 aaPredicted RBP13.49□□□□□ -0.25
USP39-220ENST00000613444 FER1L5A0AVI2 2057 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 ZNF860A6NHJ4 632 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 GLOD5A6NK44 160 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 CDX4O14627 284 aaPredicted RBP13.49□□□□□ -0.25
USP39-220ENST00000613444 TOX3O15405 576 aaPredicted RBP13.49□□□□□ -0.25
USP39-220ENST00000613444 FOXS1O43638 330 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 GUCY1B2O75343 617 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 CPSF4O95639 269 aaKnown RBP13.49□□□□□ -0.25
USP39-220ENST00000613444 CPNE6O95741 557 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 RPLP0P05388 317 aaKnown RBP13.49□□□□□ -0.25
USP39-220ENST00000613444 RETP07949 1114 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 MSL3P1P0C860 447 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 NELFEP18615 380 aaKnown RBP13.49□□□□□ -0.25
USP39-220ENST00000613444 LIPEQ05469 1076 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 SLC14A1Q13336 389 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 GAB1Q13480 694 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 ZNF551Q7Z340 670 aaPredicted RBP13.49□□□□□ -0.25
USP39-220ENST00000613444 KMT5CQ86Y97 462 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 C10orf67Q8IYJ2 551 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 ZNF583Q96ND8 569 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 GBP5Q96PP8 586 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 KAT8Q9H7Z6 458 aaKnown RBP13.49□□□□□ -0.25
USP39-220ENST00000613444 L3MBTL1Q9Y468 752 aa13.49□□□□□ -0.25
USP39-220ENST00000613444 A0A1W2PRB8 838 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 A8MU76 341 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 B3GALT2O43825 422 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 BCAS2O75934 225 aaPredicted RBP13.48□□□□□ -0.25
USP39-220ENST00000613444 ZNF806P0C7X5 589 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 FOLR1P15328 257 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 ZNF10P21506 573 aaPredicted RBP13.48□□□□□ -0.25
USP39-220ENST00000613444 GZMMP51124 257 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 ATXN3P54252 364 aaPredicted RBP13.48□□□□□ -0.25
USP39-220ENST00000613444 OLR1P78380 273 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 TCF15Q12870 199 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 INAVAQ3KP66 663 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 SLC48A1Q6P1K1 146 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 ZNF621Q6ZSS3 439 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 ARHGAP22Q7Z5H3 698 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 NATD1Q8N6N6 113 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 OR4D9Q8NGE8 314 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 OR5T3Q8NGG3 340 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 EXOSC8Q96B26 276 aaKnown RBP13.48□□□□□ -0.25
USP39-220ENST00000613444 CSF3RQ99062 836 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 SPRTNQ9H040 489 aaPredicted RBP13.48□□□□□ -0.25
USP39-220ENST00000613444 LYRM4Q9HD34 91 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 PDPK1O15530 556 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 ANP32DO95626 131 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 ANKRD34CP0C6C1 535 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 GRK6P43250 576 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 GCGRP47871 477 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 TNFRSF17Q02223 184 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 FAM53BQ14153 422 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 SF3A2Q15428 464 aaKnown RBP13.48□□□□□ -0.25
USP39-220ENST00000613444 GLIPR1L2Q4G1C9 344 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 TCTE1Q5JU00 501 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 PTRH1Q86Y79 214 aaKnown RBP13.48□□□□□ -0.25
USP39-220ENST00000613444 OR4A15Q8NGL6 344 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 OR9A4Q8NGU2 314 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 ZFP90Q8TF47 636 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 ZMYND15Q9H091 742 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 SLC35C2Q9NQQ7 365 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 PHF11Q9UIL8 331 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 UTS2RQ9UKP6 389 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 HCN4Q9Y3Q4 1203 aa13.48□□□□□ -0.25
USP39-220ENST00000613444 A0A1W2PS29 197 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 HYKKA2RU49 373 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms