RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 LINGO1Q96FE5 620 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 PDLIM5Q96HC4 596 aaKnown RBP5.84□□□□□ -1.47
CUX1-220ENST00000607092 C18orf12Q96KH6 178 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 SLC30A3Q99726 388 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 MACROD1Q9BQ69 325 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 TTTY12Q9BZ98 90 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 RHBGQ9H310 441 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 CNOT10Q9H9A5 744 aaKnown RBP5.84□□□□□ -1.47
CUX1-220ENST00000607092 NEUROD4Q9HD90 331 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 NECTIN3Q9NQS3 549 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 PNO1Q9NRX1 252 aaKnown RBP5.84□□□□□ -1.47
CUX1-220ENST00000607092 PNPLA3Q9NST1 481 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 CNIH4Q9P003 139 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 KCMF1Q9P0J7 381 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 GALPQ9UBC7 116 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 MED16Q9Y2X0 877 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 PCDHGA11Q9Y5H2 935 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 CAPN6Q9Y6Q1 641 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 PHF3Q92576 2039 aaKnown RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 ANKDD1BA6NHY2 528 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 A8MUA0 341 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 CAPN14A8MX76 684 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 AHRRA9YTQ3 701 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 PROM1O43490 865 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 NRDCO43847 1150 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 CTNSO60931 367 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 CLEC3AO75596 197 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 OR2J2O76002 312 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 GLSO94925 669 aaPredicted RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 HAUS5O94927 633 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 IL2RAP01589 272 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 SMIM10L1P0DMW3 83 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 PGAM1P18669 254 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 TNNI3P19429 210 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 SAT1P21673 171 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 ADSLP30566 484 aaPredicted RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 SERPINB1P30740 379 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 UQCRC1P31930 480 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 GPR143P51810 404 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 TERF1P54274 439 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 MTTPP55157 894 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 KCNJ2P63252 427 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 RPP38P78345 283 aaKnown RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 OLR1P78380 273 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 BTN3A2P78410 334 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 BTG2P78543 158 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 CCZ1BP86790 482 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 CCZ1P86791 482 aaPredicted RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 CDKL1Q00532 357 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 FOXD4Q12950 439 aaPredicted RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 RBBP5Q15291 538 aaKnown RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 HIST2H2ACQ16777 129 aaPredicted RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 DEFB113Q30KQ7 82 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 PAGE2BQ5JRK9 111 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 SPANXN3Q5MJ09 141 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 CATSPEREQ5SY80 951 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 SHEQ5VZ18 495 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 SLC22A10Q63ZE4 541 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 HIST2H2AA3Q6FI13 130 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 FAM45BPQ6NSW5 357 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 NXPE4Q6UWF7 544 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 IL20RBQ6UXL0 311 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 TMIGD1Q6UXZ0 262 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 FRA10AC1Q70Z53 315 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 TMPRSS11BQ86T26 416 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 ADAMTSL2Q86TH1 951 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 CAND1Q86VP6 1230 aaKnown RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 CDC20BQ86Y33 519 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 LACC1Q8IV20 430 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 ZZZ3Q8IYH5 903 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 CA13Q8N1Q1 262 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 TCAIMQ8N3R3 496 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 TMEM251Q8N6I4 163 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 C2CD4AQ8NCU7 369 aaPredicted RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 OR2L5Q8NG80 312 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 OR5M9Q8NGP3 310 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 NUBPLQ8TB37 319 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 FAM45AQ8TCE6 357 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 NEIL2Q969S2 332 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 UBE2E3Q969T4 207 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 NTNG2Q96CW9 530 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 SMIM10Q96HG1 83 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 VPS39Q96JC1 886 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 SERPINB12Q96P63 405 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 RASL10BQ96S79 203 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 SERINC2Q96SA4 455 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 SECISBP2Q96T21 854 aaKnown RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 PELOQ9BRX2 385 aaKnown RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 CENPKQ9BS16 269 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 EHD1Q9H4M9 534 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 NT5DC2Q9H857 520 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 ZFP64Q9NPA5 681 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 ACKR4Q9NPB9 350 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 BEX4Q9NWD9 120 aaPredicted RBP5.83□□□□□ -1.48
CUX1-220ENST00000607092 MS4A12Q9NXJ0 267 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 GPRC5BQ9NZH0 403 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 VTI1BQ9UEU0 232 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 GUCA1BQ9UMX6 200 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 ZANQ9Y493 2812 aa5.83□□□□□ -1.48
CUX1-220ENST00000607092 HCFC1P51610 2035 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms