RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 EFCAB3Q8N7B9 438 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 CCDC197Q8NCU1 140 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 MR1Q95460 341 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 TBC1D20Q96BZ9 403 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 PEX11GQ96HA9 241 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 MARK4Q96L34 752 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 DPY30Q9C005 99 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 SLC26A1Q9H2B4 701 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 ACTL8Q9H568 366 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 AKIRIN1Q9H9L7 192 aaPredicted RBP13.54□□□□□ -0.24
UPF1-211ENST00000600868 THSD1Q9NS62 852 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 TMEM45AQ9NWC5 275 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 TEX10Q9NXF1 929 aaPredicted RBP13.54□□□□□ -0.24
UPF1-211ENST00000600868 ZIM2Q9NZV7 527 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 IFT80Q9P2H3 777 aaPredicted RBP13.54□□□□□ -0.24
UPF1-211ENST00000600868 ZNF282Q9UDV7 671 aaPredicted RBP13.54□□□□□ -0.24
UPF1-211ENST00000600868 G3BP2Q9UN86 482 aaKnown RBP13.54□□□□□ -0.24
UPF1-211ENST00000600868 PCDHA9Q9Y5H5 950 aa13.54□□□□□ -0.24
UPF1-211ENST00000600868 COPG1Q9Y678 874 aaKnown RBP13.54□□□□□ -0.24
UPF1-211ENST00000600868 TEX51A0A1B0GUA7 166 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 C1orf226A1L170 272 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 VSTM2BA6NLU5 285 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 STMND1H3BQB6 276 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 BRINP1O60477 761 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 BMP10O95393 424 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 FHP07954 510 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 CD63P08962 238 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 NR2F6P10588 404 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 DDCP20711 480 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 GPX3P22352 226 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 JAK1P23458 1154 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 RPL3P39023 403 aaKnown RBP13.53□□□□□ -0.24
UPF1-211ENST00000600868 STX1BP61266 288 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 C18orf63Q68DL7 685 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 LCN10Q6JVE6 187 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 MRPL14Q6P1L8 145 aaKnown RBP13.53□□□□□ -0.24
UPF1-211ENST00000600868 FAM198BQ6UWH4 519 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 RIPOR1Q6ZS17 1223 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 R3HCC1LQ7Z5L2 792 aaKnown RBP13.53□□□□□ -0.24
UPF1-211ENST00000600868 ZC3H7AQ8IWR0 971 aaKnown RBP13.53□□□□□ -0.24
UPF1-211ENST00000600868 RIMKLAQ8IXN7 391 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 NLGN4XQ8N0W4 816 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 MIER2Q8N344 545 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 NLGN4YQ8NFZ3 816 aaPredicted RBP13.53□□□□□ -0.24
UPF1-211ENST00000600868 CLHC1Q8NHS4 586 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 CDC26Q8NHZ8 85 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 STARD8Q92502 1023 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 MTERF3Q96E29 417 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 ZNF764Q96H86 408 aaPredicted RBP13.53□□□□□ -0.24
UPF1-211ENST00000600868 CSF3RQ99062 836 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 YIPF2Q9BWQ6 316 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 FAM117AQ9C073 453 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 CHST8Q9H2A9 424 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 REEP4Q9H6H4 257 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 RPF2Q9H7B2 306 aaKnown RBP13.53□□□□□ -0.24
UPF1-211ENST00000600868 WDR54Q9H977 334 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 WDR41Q9HAD4 459 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 SAR1AQ9NR31 198 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 EHD3Q9NZN3 535 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 EXO1Q9UQ84 846 aaKnown RBP13.53□□□□□ -0.24
UPF1-211ENST00000600868 MRPS33Q9Y291 106 aaKnown RBP13.53□□□□□ -0.24
UPF1-211ENST00000600868 MSRB2Q9Y3D2 182 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 AK5Q9Y6K8 562 aa13.53□□□□□ -0.24
UPF1-211ENST00000600868 SDK2Q58EX2 2172 aa13.52□□□□□ -0.24
UPF1-211ENST00000600868 C9J4A7 227 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 FAM227AF5H4B4 570 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 SCAMP2O15127 329 aaKnown RBP13.52□□□□□ -0.25
UPF1-211ENST00000600868 PGRMC2O15173 223 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 RAD1O60671 282 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 TBX19O60806 448 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 SLC22A3O75751 556 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 LRATO95237 230 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 FURINP09958 794 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 RAB40ALP0C0E4 278 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 ADSLP30566 484 aaPredicted RBP13.52□□□□□ -0.25
UPF1-211ENST00000600868 HPCAL1P37235 193 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 CLNS1AP54105 237 aaKnown RBP13.52□□□□□ -0.25
UPF1-211ENST00000600868 UFM1P61960 85 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 MC1RQ01726 317 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 OCA2Q04671 838 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 PDE7AQ13946 482 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 NKG7Q16617 165 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 OR52E8Q6IFG1 317 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 ZNF595Q8IYB9 648 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 CACNA2D3Q8IZS8 1091 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 SHISA5Q8N114 240 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 MMP21Q8N119 569 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 KRTCAP2Q8N6L1 136 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 FAM47BQ8NA70 645 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 GLB1L3Q8NCI6 653 aaPredicted RBP13.52□□□□□ -0.25
UPF1-211ENST00000600868 STT3BQ8TCJ2 826 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 TANKQ92844 425 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 TESCQ96BS2 214 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 ZNF578Q96N58 590 aaPredicted RBP13.52□□□□□ -0.25
UPF1-211ENST00000600868 NMUR2Q9GZQ4 415 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 LANCL2Q9NS86 450 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 C14orf105Q9NVL8 296 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 TAS2R7Q9NYW3 318 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 CTSFQ9UBX1 484 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 GPN3Q9UHW5 284 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms