RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 DMRT3Q9NQL9 472 aa9.82□□□□□ -0.84
CCDC9-203ENST00000596938 PNO1Q9NRX1 252 aaKnown RBP9.82□□□□□ -0.84
CCDC9-203ENST00000596938 ZNF358Q9NW07 568 aa9.82□□□□□ -0.84
CCDC9-203ENST00000596938 ANKRD10Q9NXR5 420 aa9.82□□□□□ -0.84
CCDC9-203ENST00000596938 PLEKHB1Q9UF11 243 aaPredicted RBP9.82□□□□□ -0.84
CCDC9-203ENST00000596938 PPT2Q9UMR5 302 aa9.82□□□□□ -0.84
CCDC9-203ENST00000596938 CLCA3PQ9Y6N3 262 aa9.82□□□□□ -0.84
CCDC9-203ENST00000596938 SPACA6W5XKT8 324 aa9.82□□□□□ -0.84
CCDC9-203ENST00000596938 CNTRLQ7Z7A1 2325 aa9.82□□□□□ -0.84
CCDC9-203ENST00000596938 TRBV11-1A0A0K0K1C0 115 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 A0A1B0GUH1 482 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 CYSRT1A8MQ03 144 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 TRIM49D1C9J1S8 452 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 RTCAO00442 366 aaKnown RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 FCHO1O14526 889 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 OR7A17O14581 309 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 LRRTM2O43300 516 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 ZFAND5O76080 213 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 CLDN9O95484 217 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 MST1P26927 711 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 EEF1DP29692 281 aaKnown RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 PPP2R1BP30154 601 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 SSR2P43308 183 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 PHEXP78562 749 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 STX4Q12846 297 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 SLAMF1Q13291 335 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 CPSF6Q16630 551 aaKnown RBP eCLIP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 KRTCAP3Q53RY4 240 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 C10orf62Q5T681 223 aaPredicted RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 ZNF468Q5VIY5 522 aaPredicted RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 ADGRD1Q6QNK2 874 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 ZNF227Q86WZ6 799 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 MYLK4Q86YV6 388 aaPredicted RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 ZCCHC7Q8N3Z6 543 aaKnown RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 TMEM151AQ8N4L1 468 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 PTGR2Q8N8N7 351 aaPredicted RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 UHMK1Q8TAS1 419 aaKnown RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 WDR20Q8TBZ3 569 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 PTPMT1Q8WUK0 201 aaPredicted RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 TANKQ92844 425 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 DAZLQ92904 295 aaKnown RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 RELTQ969Z4 430 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 ANKRD9Q96BM1 317 aaPredicted RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 MTBPQ96DY7 904 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 PHF21BQ96EK2 531 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 CSF3RQ99062 836 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 MTERF1Q99551 399 aaKnown RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 MRPL46Q9H2W6 279 aaKnown RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 NOL11Q9H8H0 719 aaKnown RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 KLHL1Q9NR64 748 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 CPSF2Q9P2I0 782 aaKnown RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 SEC14L3Q9UDX4 400 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 FETUBQ9UGM5 382 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 ZNF223Q9UK11 482 aaPredicted RBP9.81□□□□□ -0.84
CCDC9-203ENST00000596938 RNF11Q9Y3C5 154 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 POLEQ07864 2286 aa9.81□□□□□ -0.84
CCDC9-203ENST00000596938 ESPL1Q14674 2120 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 SCN3AQ9NY46 2000 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 EXOC1LA0A1B0GW35 172 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 SAP18O00422 153 aaKnown RBP9.8□□□□□ -0.84
CCDC9-203ENST00000596938 PLPP1O14494 284 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 RIPK2O43353 540 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 PROM1O43490 865 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 SMIM24O75264 130 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 SH3BGRLO75368 114 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 MLYCDO95822 493 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 IFNA16P05015 189 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 SBK3P0C264 359 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 CPN2P22792 545 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 GCAP28676 217 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 TLX1P31314 330 aaPredicted RBP9.8□□□□□ -0.84
CCDC9-203ENST00000596938 ST13P50502 369 aaKnown RBP9.8□□□□□ -0.84
CCDC9-203ENST00000596938 RAP1GDS1P52306 607 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 PER3P56645 1201 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 KCNK10P57789 538 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 RPS13P62277 151 aaKnown RBP9.8□□□□□ -0.84
CCDC9-203ENST00000596938 IGLV3-21P80748 117 aaPredicted RBP9.8□□□□□ -0.84
CCDC9-203ENST00000596938 DDX39BQ13838 428 aaKnown RBP9.8□□□□□ -0.84
CCDC9-203ENST00000596938 ZRSR2Q15696 482 aaKnown RBP9.8□□□□□ -0.84
CCDC9-203ENST00000596938 MAPKAPK3Q16644 382 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 MRM1Q6IN84 353 aaKnown RBP9.8□□□□□ -0.84
CCDC9-203ENST00000596938 GFRALQ6UXV0 394 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 GALNTL5Q7Z4T8 443 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 CLNKQ7Z7G1 428 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 GPR180Q86V85 440 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 LCA5Q86VQ0 697 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 RNF175Q8N4F7 328 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 EIF1ADQ8N9N8 165 aaKnown RBP9.8□□□□□ -0.84
CCDC9-203ENST00000596938 FAM98AQ8NCA5 519 aaKnown RBP9.8□□□□□ -0.84
CCDC9-203ENST00000596938 OR8K3Q8NH51 312 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 OR14A16Q8NHC5 309 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 THAP3Q8WTV1 239 aaPredicted RBP9.8□□□□□ -0.84
CCDC9-203ENST00000596938 NCLNQ969V3 563 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 ATP6V1E2Q96A05 226 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 TMEM125Q96AQ2 219 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 SCYL1Q96KG9 808 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 CCDC77Q9BR77 488 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 C1QTNF3Q9BXJ4 246 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 HES7Q9BYE0 225 aa9.8□□□□□ -0.84
CCDC9-203ENST00000596938 TXLNGYQ9BZA5 131 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms