RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 CPSF6Q16630 551 aaKnown RBP eCLIP14.26□□□□□ -0.13
TRIM28-203ENST00000593582 OR4C11Q6IEV9 310 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 TMEM132CQ8N3T6 1108 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 RNF175Q8N4F7 328 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 TMEM178AQ8NBL3 297 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 APCDD1LQ8NCL9 501 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 VMP1Q96GC9 406 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 MAPKAP1Q9BPZ7 522 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 MRPL57Q9BQC6 102 aaKnown RBP14.26□□□□□ -0.13
TRIM28-203ENST00000593582 RHOXF2Q9BQY4 288 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 CCDC77Q9BR77 488 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 NOL11Q9H8H0 719 aaKnown RBP14.26□□□□□ -0.13
TRIM28-203ENST00000593582 KLHL1Q9NR64 748 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 MS4A12Q9NXJ0 267 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 LRFN1Q9P244 771 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 PPIEQ9UNP9 301 aaKnown RBP14.26□□□□□ -0.13
TRIM28-203ENST00000593582 CLDN16Q9Y5I7 305 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 STX16-NPEPL1H3BU86 382 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 STX16O14662 325 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 RIPK2O43353 540 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 CPN2P22792 545 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 TDGF1P3P51864 188 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 CCNG1P51959 295 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 ARFIP1P53367 373 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 RPS13P62277 151 aaKnown RBP14.25□□□□□ -0.13
TRIM28-203ENST00000593582 SLAMF1Q13291 335 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 SERTAD2Q14140 314 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 C4orf17Q53FE4 359 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 GFRALQ6UXV0 394 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 ARMC10Q8N2F6 343 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 L3MBTL4Q8NA19 623 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 C7orf57Q8NEG2 295 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 THAP3Q8WTV1 239 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-203ENST00000593582 DAZLQ92904 295 aaKnown RBP14.25□□□□□ -0.13
TRIM28-203ENST00000593582 NCLNQ969V3 563 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 TMEM125Q96AQ2 219 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 MTBPQ96DY7 904 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 SCMH1Q96GD3 660 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 HES7Q9BYE0 225 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 ALOXE3Q9BYJ1 711 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 MRPL46Q9H2W6 279 aaKnown RBP14.25□□□□□ -0.13
TRIM28-203ENST00000593582 VTI1BQ9UEU0 232 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 FBXW2Q9UKT8 454 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 RNF11Q9Y3C5 154 aa14.25□□□□□ -0.13
TRIM28-203ENST00000593582 WIPF3A6NGB9 483 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 PLPP1O14494 284 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 LRRTM2O43300 516 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 LDB3O75112 727 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 SLC25A12O75746 678 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 NEURL1O76050 574 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 ZFAND5O76080 213 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 LDLRP01130 860 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 SP1P08047 785 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 RNF224P0DH78 156 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 TLX1P31314 330 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-203ENST00000593582 TRHRP34981 398 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-203ENST00000593582 HLCSP50747 726 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 KCNK10P57789 538 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 PMP22Q01453 160 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 ZRSR2Q15696 482 aaKnown RBP14.24□□□□□ -0.13
TRIM28-203ENST00000593582 MAPKAPK3Q16644 382 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 ZNF468Q5VIY5 522 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-203ENST00000593582 SLC25A25Q6KCM7 469 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 ZCCHC7Q8N3Z6 543 aaKnown RBP14.24□□□□□ -0.13
TRIM28-203ENST00000593582 FAM98AQ8NCA5 519 aaKnown RBP14.24□□□□□ -0.13
TRIM28-203ENST00000593582 OR52B6Q8NGF0 335 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 OR14A16Q8NHC5 309 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 CDK15Q96Q40 435 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 SORBS1Q9BX66 1292 aaKnown RBP14.24□□□□□ -0.13
TRIM28-203ENST00000593582 TRIM45Q9H8W5 580 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-203ENST00000593582 PSD3Q9NYI0 1048 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 SEC14L3Q9UDX4 400 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 PLEKHB1Q9UF11 243 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-203ENST00000593582 PHF11Q9UIL8 331 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 PCTPQ9UKL6 214 aa14.24□□□□□ -0.13
TRIM28-203ENST00000593582 SPTAN1Q13813 2472 aaKnown RBP14.24□□□□□ -0.13
TRIM28-203ENST00000593582 HIVEP3Q5T1R4 2406 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 MYOCOSA0A1B0GUC4 107 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 FOXE1O00358 373 aaPredicted RBP14.23□□□□□ -0.13
TRIM28-203ENST00000593582 OR7A17O14581 309 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 UNC5CO95185 931 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 MLYCDO95822 493 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 STSP08842 583 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 FAM153BP0C7A2 387 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 TNNI3P19429 210 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 MST1P26927 711 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 GPR143P51810 404 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 NEK2P51955 445 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 PER3P56645 1201 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 CUL3Q13618 768 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 FAM153CQ494X1 144 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 C10orf62Q5T681 223 aaPredicted RBP14.23□□□□□ -0.13
TRIM28-203ENST00000593582 ADGRD1Q6QNK2 874 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 TIFABQ6ZNK6 161 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 GALNTL5Q7Z4T8 443 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 GPR180Q86V85 440 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 CNPY4Q8N129 248 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 TMEM156Q8N614 296 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 MORN4Q8NDC4 146 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 WDR20Q8TBZ3 569 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms