RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TAC1P20366 129 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 CPN2P22792 545 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 TNFRSF8P28908 595 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 ST13P50502 369 aaKnown RBP22.33■■□□□ 1.17
SHMT1-206ENST00000579558 NEK2P51955 445 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 STX4Q12846 297 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 TRAF3Q13114 568 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 SLAMF1Q13291 335 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 TUBA3CQ13748 450 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 ELOAQ14241 798 aaKnown RBP22.33■■□□□ 1.17
SHMT1-206ENST00000579558 TUBA3EQ6PEY2 450 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 RPS27LQ71UM5 84 aaKnown RBP22.33■■□□□ 1.17
SHMT1-206ENST00000579558 LCA5Q86VQ0 697 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 CNPY4Q8N129 248 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 BCORP1Q8N888 145 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 PRR7Q8TB68 274 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 ACMSDQ8TDX5 336 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 DEFB126Q9BYW3 111 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 ANKRD10Q9NXR5 420 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 TRBV11-1A0A0K0K1C0 115 aa22.32■■□□□ 1.16
SHMT1-206ENST00000579558 BLACEA4D250 179 aa22.32■■□□□ 1.16
SHMT1-206ENST00000579558 FOXE1O00358 373 aaPredicted RBP22.32■■□□□ 1.16
SHMT1-206ENST00000579558 IFNA16P05015 189 aa22.32■■□□□ 1.16
SHMT1-206ENST00000579558 CLCN2P51788 898 aa22.32■■□□□ 1.16
SHMT1-206ENST00000579558 ARFIP1P53367 373 aa22.32■■□□□ 1.16
SHMT1-206ENST00000579558 CUL3Q13618 768 aa22.32■■□□□ 1.16
SHMT1-206ENST00000579558 TTC19Q6DKK2 380 aaPredicted RBP22.32■■□□□ 1.16
SHMT1-206ENST00000579558 APCDD1LQ8NCL9 501 aa22.32■■□□□ 1.16
SHMT1-206ENST00000579558 ZNF483Q8TF39 744 aaPredicted RBP22.32■■□□□ 1.16
SHMT1-206ENST00000579558 MTFMTQ96DP5 389 aaKnown RBP22.32■■□□□ 1.16
SHMT1-206ENST00000579558 ALOXE3Q9BYJ1 711 aa22.32■■□□□ 1.16
SHMT1-206ENST00000579558 MYOCOSA0A1B0GUC4 107 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 LDB3O75112 727 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 AGFG2O95081 481 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 ETHE1O95571 254 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 PYGBP11216 843 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 CD96P40200 585 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 OC90Q02509 493 aaPredicted RBP22.31■■□□□ 1.16
SHMT1-206ENST00000579558 OR1C1Q15619 314 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 ELAVL1Q15717 326 aaKnown RBP22.31■■□□□ 1.16
SHMT1-206ENST00000579558 ZNF766Q5HY98 468 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 FRG2Q64ET8 278 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 MILR1Q7Z6M3 343 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 TMEM132CQ8N3T6 1108 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 ZCCHC7Q8N3Z6 543 aaKnown RBP22.31■■□□□ 1.16
SHMT1-206ENST00000579558 ST6GALNAC3Q8NDV1 305 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 OR4F6Q8NGB9 312 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 MZB1Q8WU39 189 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 NCLNQ969V3 563 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 VMP1Q96GC9 406 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 SIGLEC12Q96PQ1 595 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 FRG2BQ96QU4 278 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 TAAR6Q96RI8 345 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 C1QTNF3Q9BXJ4 246 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 OLAHQ9NV23 265 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 MS4A12Q9NXJ0 267 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 PSD3Q9NYI0 1048 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 PHF11Q9UIL8 331 aa22.31■■□□□ 1.16
SHMT1-206ENST00000579558 CYSRT1A8MQ03 144 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 RASAL1O95294 804 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 OTCP00480 354 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 SHBGP04278 402 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 TSPAN8P19075 237 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 TPP2P29144 1249 aaPredicted RBP22.3■■□□□ 1.16
SHMT1-206ENST00000579558 CDH13P55290 713 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 MLF1P58340 268 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 ID2Q02363 134 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 IFT88Q13099 833 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 SERTAD2Q14140 314 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 GGTA1PQ4G0N0 100 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 GPR180Q86V85 440 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 MDS2Q8NDY4 140 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.3■■□□□ 1.16
SHMT1-206ENST00000579558 SERPINI1Q99574 410 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 ZNF717Q9BY31 904 aaPredicted RBP22.3■■□□□ 1.16
SHMT1-206ENST00000579558 VTI1BQ9UEU0 232 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 PPT2Q9UMR5 302 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 PPIEQ9UNP9 301 aaKnown RBP22.3■■□□□ 1.16
SHMT1-206ENST00000579558 CLCA3PQ9Y6N3 262 aa22.3■■□□□ 1.16
SHMT1-206ENST00000579558 PTPN13Q12923 2485 aa22.29■■□□□ 1.16
SHMT1-206ENST00000579558 EEDO75530 441 aaKnown RBP22.29■■□□□ 1.16
SHMT1-206ENST00000579558 GSTA1P08263 222 aa22.29■■□□□ 1.16
SHMT1-206ENST00000579558 EDN3P14138 238 aa22.29■■□□□ 1.16
SHMT1-206ENST00000579558 BSGP35613 385 aa22.29■■□□□ 1.16
SHMT1-206ENST00000579558 HNRNPH2P55795 449 aaKnown RBP22.29■■□□□ 1.16
SHMT1-206ENST00000579558 HERVK_113P63132 956 aa22.29■■□□□ 1.16
SHMT1-206ENST00000579558 TNFRSF17Q02223 184 aa22.29■■□□□ 1.16
SHMT1-206ENST00000579558 C10orf62Q5T681 223 aaPredicted RBP22.29■■□□□ 1.16
SHMT1-206ENST00000579558 HORMAD2Q8N7B1 307 aa22.29■■□□□ 1.16
SHMT1-206ENST00000579558 THAP3Q8WTV1 239 aaPredicted RBP22.29■■□□□ 1.16
SHMT1-206ENST00000579558 DAZLQ92904 295 aaKnown RBP22.29■■□□□ 1.16
SHMT1-206ENST00000579558 ANKRD9Q96BM1 317 aaPredicted RBP22.29■■□□□ 1.16
SHMT1-206ENST00000579558 ERVK-6Q9BXR3 956 aa22.29■■□□□ 1.16
SHMT1-206ENST00000579558 ANKZF1Q9H8Y5 726 aa22.29■■□□□ 1.16
SHMT1-206ENST00000579558 LYARQ9NX58 379 aaKnown RBP22.29■■□□□ 1.16
SHMT1-206ENST00000579558 ZNF223Q9UK11 482 aaPredicted RBP22.29■■□□□ 1.16
SHMT1-206ENST00000579558 ATG4BQ9Y4P1 393 aa22.29■■□□□ 1.16
SHMT1-206ENST00000579558 DOPEY2Q9Y3R5 2298 aa22.29■■□□□ 1.16
SHMT1-206ENST00000579558 A0A0A6YYD5 115 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 A0A1B0GTL3 188 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms