RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TMEM132CQ8N3T6 1108 aa10.22□□□□□ -0.77
VPS53-207ENST00000570510 NEIL3Q8TAT5 605 aa10.22□□□□□ -0.77
VPS53-207ENST00000570510 SCYL1Q96KG9 808 aa10.22□□□□□ -0.77
VPS53-207ENST00000570510 TRIB1Q96RU8 372 aa10.22□□□□□ -0.77
VPS53-207ENST00000570510 CLK4Q9HAZ1 481 aaKnown RBP10.22□□□□□ -0.77
VPS53-207ENST00000570510 TREX1Q9NSU2 369 aa10.22□□□□□ -0.77
VPS53-207ENST00000570510 TRMT1Q9NXH9 659 aaKnown RBP10.22□□□□□ -0.77
VPS53-207ENST00000570510 IGKV3D-11A0A0A0MRZ8 115 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 A0A1W2PPR1 153 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 PABPN1LA6NDY0 278 aaKnown RBP10.21□□□□□ -0.77
VPS53-207ENST00000570510 SDR42E2A6NKP2 422 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 PRKNO60260 465 aaPredicted RBP10.21□□□□□ -0.77
VPS53-207ENST00000570510 TTC4O95801 387 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 CCL3P10147 92 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 NID1P14543 1247 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 ENDOUP21128 410 aaKnown RBP10.21□□□□□ -0.77
VPS53-207ENST00000570510 IMPA1P29218 277 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 PIGAP37287 484 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 CCR8P51685 355 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 GPR143P51810 404 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 ZNF136P52737 540 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 RAB8AP61006 207 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 TBL3Q12788 808 aaKnown RBP10.21□□□□□ -0.77
VPS53-207ENST00000570510 DHX34Q14147 1143 aaKnown RBP10.21□□□□□ -0.77
VPS53-207ENST00000570510 HYAL4Q2M3T9 481 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 C10orf62Q5T681 223 aaPredicted RBP10.21□□□□□ -0.77
VPS53-207ENST00000570510 SLC22A10Q63ZE4 541 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 HEPHL1Q6MZM0 1159 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 UBE2R2Q712K3 238 aaPredicted RBP10.21□□□□□ -0.77
VPS53-207ENST00000570510 LUZP2Q86TE4 346 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 CREG2Q8IUH2 290 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 PALM2Q8IXS6 379 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 AFAP1L2Q8N4X5 818 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 OR5L2Q8NGL0 311 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 DAZLQ92904 295 aaKnown RBP10.21□□□□□ -0.77
VPS53-207ENST00000570510 LRRC39Q96DD0 335 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 BIRC8Q96P09 236 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 SLC30A3Q99726 388 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 CCDC68Q9H2F9 335 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 SLC6A15Q9H2J7 730 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 ZFP64Q9NPA5 681 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 SEMA4BQ9NPR2 832 aaPredicted RBP10.21□□□□□ -0.77
VPS53-207ENST00000570510 ZNF226Q9NYT6 803 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 KLHL42Q9P2K6 505 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 SOX13Q9UN79 622 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 CAMK2AQ9UQM7 478 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 MRPS33Q9Y291 106 aaKnown RBP10.21□□□□□ -0.77
VPS53-207ENST00000570510 MMACHCQ9Y4U1 282 aa10.21□□□□□ -0.77
VPS53-207ENST00000570510 CHD3Q12873 2000 aaKnown RBP10.21□□□□□ -0.78
VPS53-207ENST00000570510 PHF1O43189 567 aaPredicted RBP10.2□□□□□ -0.78
VPS53-207ENST00000570510 TRAPPC6AO75865 159 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 VAPBO95292 243 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 TNNI3P19429 210 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 CCND1P24385 295 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 GDF1P27539 372 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 GRIA1P42261 906 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 MAGEA3P43357 314 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 KCNJ1P48048 391 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 SESN2P58004 480 aaPredicted RBP10.2□□□□□ -0.78
VPS53-207ENST00000570510 ETF1P62495 437 aaKnown RBP10.2□□□□□ -0.78
VPS53-207ENST00000570510 FOXO1Q12778 655 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 GPS1Q13098 491 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 CUL1Q13616 776 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 RCAN2Q14206 197 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 GBX1Q14549 363 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 CHRFAM7AQ494W8 412 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 C20orf204Q6ZNR8 217 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 PPIL6Q8IXY8 311 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 LRRC56Q8IYG6 542 aaPredicted RBP10.2□□□□□ -0.78
VPS53-207ENST00000570510 GPATCH11Q8N954 259 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 BBOF1Q8ND07 529 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 CALML6Q8TD86 181 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 ASB11Q8WXH4 323 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 PIK3IP1Q96FE7 263 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 FAR2Q96K12 515 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 ACKR4Q9NPB9 350 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 ADAP2Q9NPF8 381 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 PRTFDC1Q9NRG1 225 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 YAE1D1Q9NRH1 226 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 GALNT8Q9NY28 637 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 C6orf203Q9P0P8 240 aaPredicted RBP10.2□□□□□ -0.78
VPS53-207ENST00000570510 GALPQ9UBC7 116 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 ZNF223Q9UK11 482 aaPredicted RBP10.2□□□□□ -0.78
VPS53-207ENST00000570510 ATG4BQ9Y4P1 393 aa10.2□□□□□ -0.78
VPS53-207ENST00000570510 GOLGA8KD6RF30 607 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 GOLGA8TH3BQL2 631 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 KIF2AO00139 706 aaPredicted RBP10.19□□□□□ -0.78
VPS53-207ENST00000570510 IL18BPO95998 194 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 ZSCAN5DPP0CG00 497 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 TMIGD3P0DMS9 266 aaPredicted RBP10.19□□□□□ -0.78
VPS53-207ENST00000570510 ENO3P13929 434 aaPredicted RBP10.19□□□□□ -0.78
VPS53-207ENST00000570510 ETS1P14921 441 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 OGNP20774 298 aaKnown RBP10.19□□□□□ -0.78
VPS53-207ENST00000570510 SAT1P21673 171 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 CPOXP36551 454 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 SKIV2L2P42285 1042 aaKnown RBP10.19□□□□□ -0.78
VPS53-207ENST00000570510 PTH2RP49190 550 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 HK2P52789 917 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 DIO3P55073 304 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 DUSP8Q13202 625 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms