RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 WDR34Q96EX3 536 aa12.67□□□□□ -0.38
CLK3-218ENST00000566926 THOC1Q96FV9 657 aaKnown RBP12.67□□□□□ -0.38
CLK3-218ENST00000566926 TUBB6Q9BUF5 446 aa12.67□□□□□ -0.38
CLK3-218ENST00000566926 NUDT9Q9BW91 350 aa12.67□□□□□ -0.38
CLK3-218ENST00000566926 NUF2Q9BZD4 464 aa12.67□□□□□ -0.38
CLK3-218ENST00000566926 SHCBP1LQ9BZQ2 653 aa12.67□□□□□ -0.38
CLK3-218ENST00000566926 SNX6Q9UNH7 406 aa12.67□□□□□ -0.38
CLK3-218ENST00000566926 A0A1W2PQ72 361 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 CCT8L1PA6NM43 557 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 K7EM74 188 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 FFAR3O14843 346 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 GPR42O15529 346 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 ALOX12BO75342 701 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 RDH16O75452 317 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 WFS1O76024 890 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 ZNF888P0CJ79 500 aaPredicted RBP12.66□□□□□ -0.38
CLK3-218ENST00000566926 C8orf89P0DMQ9 161 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 ICAM2P13598 275 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 TSPAN8P19075 237 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 JAK1P23458 1154 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 ADSLP30566 484 aaPredicted RBP12.66□□□□□ -0.38
CLK3-218ENST00000566926 BTKQ06187 659 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 CHIT1Q13231 466 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 DOC2AQ14183 400 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 E2F2Q14209 437 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 MINDY4Q4G0A6 757 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 DEFB134Q4QY38 66 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 FBXO48Q5FWF7 155 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 TOR1AIP1Q5JTV8 583 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 FAM91A1Q658Y4 838 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 LETMD1Q6P1Q0 360 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 TMEM205Q6UW68 189 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 C6orf89Q6UWU4 347 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 RPS27LQ71UM5 84 aaKnown RBP12.66□□□□□ -0.38
CLK3-218ENST00000566926 ZNF771Q7L3S4 317 aaPredicted RBP12.66□□□□□ -0.38
CLK3-218ENST00000566926 MAVSQ7Z434 540 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 PARP9Q8IXQ6 854 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLK3-218ENST00000566926 CDYL2Q8N8U2 506 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 UTP15Q8TED0 518 aaKnown RBP12.66□□□□□ -0.38
CLK3-218ENST00000566926 CREB3L4Q8TEY5 395 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 GAL3ST3Q96A11 431 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 LHPPQ9H008 270 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 PRM3Q9NNZ6 103 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 HCN3Q9P1Z3 774 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 HEY2Q9UBP5 337 aa12.66□□□□□ -0.38
CLK3-218ENST00000566926 HELZ2Q9BYK8 2649 aaKnown RBP12.66□□□□□ -0.38
CLK3-218ENST00000566926 RP1L1Q8IWN7 2480 aaPredicted RBP12.66□□□□□ -0.38
CLK3-218ENST00000566926 BSNQ9UPA5 3926 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 LOC102723996A0A087X1L8 192 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 TMEM233B4DJY2 109 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 H0YIV9 168 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 PSMD12O00232 456 aaPredicted RBP12.65□□□□□ -0.38
CLK3-218ENST00000566926 PPP6CO00743 305 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 ULK1O75385 1050 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 OR4F21O95013 312 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 PDGFAP04085 211 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 SMIM10L1P0DMW3 83 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 EPORP19235 508 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 SERPINB3P29508 390 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 SERPINB1P30740 379 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 TGM3Q08188 693 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 IFT88Q13099 833 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 SMU1Q2TAY7 513 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 AGAP7PQ5VUJ5 663 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 CLEC6AQ6EIG7 209 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 FAAH2Q6GMR7 532 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 GRHL2Q6ISB3 625 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 RIPOR1Q6ZS17 1223 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 PDSS2Q86YH6 399 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 TMEM151BQ8IW70 566 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 DDIASQ8IXT1 998 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 KBTBD2Q8IY47 623 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 ZADH2Q8N4Q0 377 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 PLPP5Q8NEB5 264 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 SRFBP1Q8NEF9 429 aaKnown RBP12.65□□□□□ -0.38
CLK3-218ENST00000566926 TBC1D20Q96BZ9 403 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 C8orf44Q96CB5 159 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 PEX11GQ96HA9 241 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 SMIM10Q96HG1 83 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 METTL2AQ96IZ6 378 aaKnown RBP12.65□□□□□ -0.38
CLK3-218ENST00000566926 AGAP4Q96P64 663 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 NPLQ9BXD5 320 aaPredicted RBP12.65□□□□□ -0.38
CLK3-218ENST00000566926 VN1R1Q9GZP7 353 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 RHBGQ9H310 441 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 ELOVL6Q9H5J4 265 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 ZNF552Q9H707 407 aaPredicted RBP12.65□□□□□ -0.38
CLK3-218ENST00000566926 ADGRE2Q9UHX3 823 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 ZNF225Q9UK10 706 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 TSC22D4Q9Y3Q8 395 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 PCDHGA11Q9Y5H2 935 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 NBASA2RRP1 2371 aa12.65□□□□□ -0.38
CLK3-218ENST00000566926 BAHCC1Q9P281 2608 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 IGHV1-45A0A0A0MS14 117 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 SERTM1A2A2V5 107 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 LRIT2A6NDA9 550 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 ZNF860A6NHJ4 632 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 SLC28A1O00337 649 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 SDHDO14521 159 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 CHST10O43529 356 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms