RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 OR2T11Q8NH01 316 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 PPP1R14CQ8TAE6 165 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 PTCHD1Q96NR3 888 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 BBC3Q96PG8 261 aaPredicted RBP18.37■□□□□ 0.53
CLN3-225ENST00000566824 SORT1Q99523 831 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 WDR77Q9BQA1 342 aaPredicted RBP18.37■□□□□ 0.53
CLN3-225ENST00000566824 ZNF160Q9HCG1 818 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 TRAF6Q9Y4K3 522 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 DNAJC15Q9Y5T4 150 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 TLN1Q9Y490 2541 aaKnown RBP18.37■□□□□ 0.53
CLN3-225ENST00000566824 FAM208BQ5VWN6 2430 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 IGHV1-45A0A0A0MS14 117 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 H3BQF6 201 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 K7EM74 188 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 PEX12O00623 359 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 PRMT3O60678 531 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 FGF4P08620 206 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 HSD3B1P14060 373 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 CPN2P22792 545 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 JAK1P23458 1154 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 HSD3B2P26439 372 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 TSFMP43897 325 aaKnown RBP18.36■□□□□ 0.53
CLN3-225ENST00000566824 CCL11P51671 97 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 POLE2P56282 527 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 ABCE1P61221 599 aaKnown RBP18.36■□□□□ 0.53
CLN3-225ENST00000566824 ID2Q02363 134 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 NSDHLQ15738 373 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 QSOX2Q6ZRP7 698 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 TRIM46Q7Z4K8 759 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 GPR180Q86V85 440 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 APLFQ8IW19 511 aaPredicted RBP18.36■□□□□ 0.53
CLN3-225ENST00000566824 MMP21Q8N119 569 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 EFCAB3Q8N7B9 438 aa18.36■□□□□ 0.53
CLN3-225ENST00000566824 GBP7Q8N8V2 638 aaPredicted RBP18.36■□□□□ 0.53
CLN3-225ENST00000566824 TEX10Q9NXF1 929 aaPredicted RBP18.36■□□□□ 0.53
CLN3-225ENST00000566824 A0A1W2PQ72 361 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 GLOD5A6NK44 160 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 A6NL46 340 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 PROM1O43490 865 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 SEC24DO94855 1032 aaPredicted RBP18.35■□□□□ 0.53
CLN3-225ENST00000566824 LINC00032P0C843 101 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 SERPINB5P36952 375 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 BST1Q10588 318 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 RAPSNQ13702 412 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 LY6DQ14210 128 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 SFT2D3Q587I9 215 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 Q6ZSR9 355 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 CPEB2Q7Z5Q1 589 aaKnown RBP18.35■□□□□ 0.53
CLN3-225ENST00000566824 OR4N5Q8IXE1 308 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 PARP9Q8IXQ6 854 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 SREK1Q8WXA9 508 aaKnown RBP18.35■□□□□ 0.53
CLN3-225ENST00000566824 NACC2Q96BF6 587 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 C11orf24Q96F05 449 aaPredicted RBP18.35■□□□□ 0.53
CLN3-225ENST00000566824 IP6K3Q96PC2 410 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 ZNF700Q9H0M5 742 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 EML4Q9HC35 981 aaKnown RBP18.35■□□□□ 0.53
CLN3-225ENST00000566824 PRDM9Q9NQV7 894 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 PRTFDC1Q9NRG1 225 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 NKIRAS1Q9NYS0 192 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 GIMAP2Q9UG22 337 aa18.35■□□□□ 0.53
CLN3-225ENST00000566824 TCRBV16S1A1N1A0A5B0 115 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 A8MUA0 341 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 TMEM114B3SHH9 223 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 PGRMC2O15173 223 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 LDB3O75112 727 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 HSPA4LO95757 839 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 AIFM1O95831 613 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 JUNP05412 331 aaKnown RBP18.34■□□□□ 0.53
CLN3-225ENST00000566824 SLC1A6P48664 564 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 TNFRSF17Q02223 184 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 ZNF33BQ06732 778 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 STX3Q13277 289 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 CCNYL2Q5T2Q4 361 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 CYP20A1Q6UW02 462 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 ZNF595Q8IYB9 648 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 CLYBLQ8N0X4 340 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 ZNF781Q8N8C0 355 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 TMEM102Q8N9M5 508 aaPredicted RBP18.34■□□□□ 0.53
CLN3-225ENST00000566824 TWIST2Q8WVJ9 160 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 METTL21AQ8WXB1 218 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 ANKRD9Q96BM1 317 aaPredicted RBP18.34■□□□□ 0.53
CLN3-225ENST00000566824 IMMP1LQ96LU5 166 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 EBPLQ9BY08 206 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 SEMA4CQ9C0C4 833 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 LYARQ9NX58 379 aaKnown RBP18.34■□□□□ 0.53
CLN3-225ENST00000566824 AHSPQ9NZD4 102 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 ADAM29Q9UKF5 820 aa18.34■□□□□ 0.53
CLN3-225ENST00000566824 CROCCQ5TZA2 2017 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 A0A1W2PS29 197 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 HMGB1P1B2RPK0 211 aaPredicted RBP18.33■□□□□ 0.53
CLN3-225ENST00000566824 ERVH48-1M5A8F1 160 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 PIP5K1BO14986 540 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 FGF17O60258 216 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 HPP00738 406 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 NEFHP12036 1026 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 NR1D1P20393 614 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 HSD17B7P56937 341 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 OR4D2P58180 307 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 SLC13A2Q13183 592 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 SPDYAQ5MJ70 313 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 541.2 ms