RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CDKL2Q92772 493 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 ESAMQ96AP7 390 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 SDCCAG3Q96C92 435 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 KCNC2Q96PR1 638 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 RASL10BQ96S79 203 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 ERP44Q9BS26 406 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 TBCDQ9BTW9 1192 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 ALOXE3Q9BYJ1 711 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 ROGDIQ9GZN7 287 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 COPS7BQ9H9Q2 264 aaPredicted RBP15.9■□□□□ 0.14
CLN3-216ENST00000565316 LIN28AQ9H9Z2 209 aaKnown RBP15.9■□□□□ 0.14
CLN3-216ENST00000565316 GRPEL1Q9HAV7 217 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 SAYSD1Q9NPB0 183 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 HPF1Q9NWY4 346 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 COQ3Q9NZJ6 369 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 WHRNQ9P202 907 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 ERVK-11Q9UQG0 969 aa15.9■□□□□ 0.14
CLN3-216ENST00000565316 TCRBV9S1A1TA0A576 114 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 PINLYPA6NC86 204 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 FANCGO15287 622 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 OR6B1O95007 311 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 SCELO95171 688 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 IFNA16P05015 189 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 GP5P40197 560 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 SOX3P41225 446 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 PCDH1Q08174 1060 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 EMC4Q5J8M3 183 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 PAGE2BQ5JRK9 111 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 TMEM211Q6ICI0 200 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 ZNF793Q6ZN11 406 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 RGS9BPQ6ZS82 235 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 SRFBP1Q8NEF9 429 aaKnown RBP15.89■□□□□ 0.13
CLN3-216ENST00000565316 OR2M7Q8NG81 312 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 ZNF473Q8WTR7 871 aaKnown RBP15.89■□□□□ 0.13
CLN3-216ENST00000565316 ASB15Q8WXK1 588 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 MS4A8Q9BY19 250 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 CD244Q9BZW8 370 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 TP63Q9H3D4 680 aaPredicted RBP15.89■□□□□ 0.13
CLN3-216ENST00000565316 ZDHHC11Q9H8X9 412 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 CD274Q9NZQ7 290 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 TXNDC16Q9P2K2 825 aa15.89■□□□□ 0.13
CLN3-216ENST00000565316 FAM187AA6NFU0 413 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 WWP2O00308 870 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 CDC40O60508 579 aaKnown RBP eCLIP15.88■□□□□ 0.13
CLN3-216ENST00000565316 GLSO94925 669 aaPredicted RBP15.88■□□□□ 0.13
CLN3-216ENST00000565316 GSTA2P09210 222 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 IGFBP2P18065 325 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 CAPN3P20807 821 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 ATP5A1P25705 553 aaKnown RBP15.88■□□□□ 0.13
CLN3-216ENST00000565316 NR0B1P51843 470 aaKnown RBP15.88■□□□□ 0.13
CLN3-216ENST00000565316 HK2P52789 917 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 KRTAP10-9P60411 292 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 RAB10P61026 200 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 MRPS25P82663 173 aaKnown RBP15.88■□□□□ 0.13
CLN3-216ENST00000565316 IRF8Q02556 426 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 STX4Q12846 297 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 CHIT1Q13231 466 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 SERTAD2Q14140 314 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 HIST2H2ACQ16777 129 aaPredicted RBP15.88■□□□□ 0.13
CLN3-216ENST00000565316 TMEM35AQ53FP2 167 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 HIST2H2AA3Q6FI13 130 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 IL20RBQ6UXL0 311 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 LRRC70Q7Z2Q7 622 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 LAS2Q8IYD9 372 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 ZNF321PQ8N8H1 164 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 ACOT4Q8N9L9 421 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 ASB5Q8WWX0 329 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 UBE2E3Q969T4 207 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 MAPKAP1Q9BPZ7 522 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 DEFB127Q9H1M4 99 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 GRHL1Q9NZI5 618 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 RNF112Q9ULX5 631 aa15.88■□□□□ 0.13
CLN3-216ENST00000565316 A0A0G2JMM0 328 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 MYOCOSA0A1B0GUC4 107 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 A0A1W2PPB8 328 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 A0A1W2PRS3 328 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 KIR3DP1A8MWS1 328 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 PDE9AO76083 593 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 MSH2P43246 934 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 GPX6P59796 221 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 PPIAP62937 165 aaKnown RBP15.87■□□□□ 0.13
CLN3-216ENST00000565316 RNF4P78317 190 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 CALCOCO2Q13137 446 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 PAOXQ6QHF9 649 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 MEX3BQ6ZN04 569 aaKnown RBP15.87■□□□□ 0.13
CLN3-216ENST00000565316 RTL4Q6ZR62 310 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 CEP128Q6ZU80 1094 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 C3orf62Q6ZUJ4 267 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 ISCA2Q86U28 154 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 C7orf57Q8NEG2 295 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 LILRB4Q8NHJ6 448 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 STAG3L4Q8TBR4 150 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 UBTD2Q8WUN7 234 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 ANKRD9Q96BM1 317 aaPredicted RBP15.87■□□□□ 0.13
CLN3-216ENST00000565316 SGCZQ96LD1 299 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 OR8D2Q9GZM6 311 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 MCCC2Q9HCC0 563 aa15.87■□□□□ 0.13
CLN3-216ENST00000565316 SETD2Q9BYW2 2564 aaPredicted RBP15.87■□□□□ 0.13
CLN3-216ENST00000565316 ZNF407Q9C0G0 2248 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 C17orf105B2RV13 164 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms