RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SAP18O00422 153 aaKnown RBP13.84□□□□□ -0.19
CLN3-213ENST00000565047 PLPP1O14494 284 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 OR7A17O14581 309 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 UGDHO60701 494 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 SLC25A12O75746 678 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 ETHE1O95571 254 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 ACSL3O95573 720 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 SBK3P0C264 359 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 GCAP28676 217 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 EEF1DP29692 281 aaKnown RBP13.84□□□□□ -0.19
CLN3-213ENST00000565047 DCTP40126 519 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 ARFIP1P53367 373 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 TGM3Q08188 693 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 ZNF787Q6DD87 383 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 MRM1Q6IN84 353 aaKnown RBP13.84□□□□□ -0.19
CLN3-213ENST00000565047 C16orf47Q6ZP98 133 aaPredicted RBP13.84□□□□□ -0.19
CLN3-213ENST00000565047 CEP128Q6ZU80 1094 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 CHSY3Q70JA7 882 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 MDGA2Q7Z553 956 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 GOLGA7Q7Z5G4 137 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 FGD2Q7Z6J4 655 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 FJX1Q86VR8 437 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 HORMAD2Q8N7B1 307 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 ZNF321PQ8N8H1 164 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 PAFAH2Q99487 392 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 FMO2Q99518 471 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 ALOXE3Q9BYJ1 711 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 TSPYL1Q9H0U9 437 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 ZBTB26Q9HCK0 441 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 DMRT3Q9NQL9 472 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 MTRF1LQ9UGC7 380 aaKnown RBP13.84□□□□□ -0.19
CLN3-213ENST00000565047 ADGRE2Q9UHX3 823 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 ZNF180Q9UJW8 692 aa13.84□□□□□ -0.19
CLN3-213ENST00000565047 MRPS33Q9Y291 106 aaKnown RBP13.84□□□□□ -0.19
CLN3-213ENST00000565047 TEX15Q9BXT5 2789 aa13.83□□□□□ -0.19
CLN3-213ENST00000565047 MYOCOSA0A1B0GUC4 107 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 SYNDIG1LA6NDD5 238 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 FGF17O60258 216 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 ZNF354AO60765 605 aaPredicted RBP13.83□□□□□ -0.2
CLN3-213ENST00000565047 LDB3O75112 727 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 SH3BGRLO75368 114 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 ITGA10O75578 1167 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 PCNAP12004 261 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 GFAPP14136 432 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 GTF2H2Q13888 395 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 UAP1Q16222 522 aaPredicted RBP13.83□□□□□ -0.2
CLN3-213ENST00000565047 MAPKAPK3Q16644 382 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.83□□□□□ -0.2
CLN3-213ENST00000565047 KRTCAP3Q53RY4 240 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 GTF2H2CQ6P1K8 395 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 SULF2Q8IWU5 870 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 TMEM132CQ8N3T6 1108 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 ZCCHC7Q8N3Z6 543 aaKnown RBP13.83□□□□□ -0.2
CLN3-213ENST00000565047 CPSF7Q8N684 471 aaKnown RBP13.83□□□□□ -0.2
CLN3-213ENST00000565047 MORN4Q8NDC4 146 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 IFT81Q8WYA0 676 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 ZNF592Q92610 1267 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 MTERF1Q99551 399 aaKnown RBP13.83□□□□□ -0.2
CLN3-213ENST00000565047 VPS11Q9H270 941 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 IPPKQ9H8X2 491 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 COPS7BQ9H9Q2 264 aaPredicted RBP13.83□□□□□ -0.2
CLN3-213ENST00000565047 PPT2Q9UMR5 302 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 RNF11Q9Y3C5 154 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 ATG4BQ9Y4P1 393 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 ASB4Q9Y574 426 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 PCDHGA11Q9Y5H2 935 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 TNPO3Q9Y5L0 923 aaKnown RBP13.83□□□□□ -0.2
CLN3-213ENST00000565047 CSMD1Q96PZ7 3565 aa13.83□□□□□ -0.2
CLN3-213ENST00000565047 DIDO1Q9BTC0 2240 aaKnown RBP13.82□□□□□ -0.2
CLN3-213ENST00000565047 ITPR2Q14571 2701 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 A0A0A6YYD5 115 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 A0A1B0GTL3 188 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 WASHC1A8K0Z3 465 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 FOXE1O00358 373 aaPredicted RBP13.82□□□□□ -0.2
CLN3-213ENST00000565047 FCHO1O14526 889 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 PROM1O43490 865 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 ASNA1O43681 348 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 SLC19A2O60779 497 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 ZFAND5O76080 213 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 TUBB4AP04350 444 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 IGKV3-11P04433 115 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 CTAGE8P0CG41 777 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 BSGP35613 385 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 HNRNPH2P55795 449 aaKnown RBP13.82□□□□□ -0.2
CLN3-213ENST00000565047 PER3P56645 1201 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 RPS13P62277 151 aaKnown RBP13.82□□□□□ -0.2
CLN3-213ENST00000565047 ALDH6A1Q02252 535 aaKnown RBP13.82□□□□□ -0.2
CLN3-213ENST00000565047 SLAMF1Q13291 335 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 CUL3Q13618 768 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 SERTAD2Q14140 314 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 RCN2Q14257 317 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 AP5B1Q2VPB7 878 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 DGAT2L6Q6ZPD8 337 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 CTAGE4Q8IX94 777 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 MNS1Q8NEH6 495 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 OR52B6Q8NGF0 335 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 OR8K3Q8NH51 312 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 C16orf52Q8NHV5 167 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 ZNF721Q8TF20 911 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 ITLN2Q8WWU7 325 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms