RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 ADPRMQ3LIE5 342 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 SPINK14Q6IE38 97 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 GRHL2Q6ISB3 625 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 H3F3CQ6NXT2 135 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 RPUSD3Q6P087 351 aaKnown RBP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 METTL2BQ6P1Q9 378 aaKnown RBP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 ZNF793Q6ZN11 406 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 GOLGA7Q7Z5G4 137 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 UBE3DQ7Z6J8 389 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 RPS19BP1Q86WX3 136 aaKnown RBP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 PTGR2Q8N8N7 351 aaPredicted RBP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 OR7G3Q8NG95 312 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 ELP5Q8TE02 316 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 UBE2E3Q969T4 207 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 ATP6V1E2Q96A05 226 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 MTERF1Q99551 399 aaKnown RBP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 MAPKAP1Q9BPZ7 522 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 NPLQ9BXD5 320 aaPredicted RBP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 DEFB126Q9BYW3 111 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 RNF32Q9H0A6 362 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 RRAGDQ9NQL2 400 aaPredicted RBP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 PRDM7Q9NQW5 492 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 MRPS33Q9Y291 106 aaKnown RBP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 MMACHCQ9Y4U1 282 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 TNPO3Q9Y5L0 923 aaKnown RBP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 IGKV3D-11A0A0A0MRZ8 115 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 TLDC2A0PJX2 215 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 STX16-NPEPL1H3BU86 382 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 STX16O14662 325 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 LDB3O75112 727 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 SMIM24O75264 130 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 EDN3P14138 238 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 TPP2P29144 1249 aaPredicted RBP12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 EEF1DP29692 281 aaKnown RBP12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 CASP2P42575 452 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 RPS13P62277 151 aaKnown RBP12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 GTF2H2Q13888 395 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 CPSF6Q16630 551 aaKnown RBP eCLIP12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 AP5B1Q2VPB7 878 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 ZNF468Q5VIY5 522 aaPredicted RBP12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 GTF2H2CQ6P1K8 395 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 GFRALQ6UXV0 394 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 LAS2Q8IYD9 372 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 NFAM1Q8NET5 270 aaPredicted RBP12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 HUS1BQ8NHY5 278 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 MTFMTQ96DP5 389 aaKnown RBP12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 SEC16BQ96JE7 1060 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 C5orf34Q96MH7 638 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 KCNC2Q96PR1 638 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 PSMG3-AS1Q96PY0 264 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 CDK15Q96Q40 435 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 BARD1Q99728 777 aaKnown RBP12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 TSPAN10Q9H1Z9 355 aaPredicted RBP12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 DCDC2Q9UHG0 476 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 LGALS13Q9UHV8 139 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 DAPP1Q9UN19 280 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 SPTBN1Q01082 2364 aaKnown RBP12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 DIDO1Q9BTC0 2240 aaKnown RBP12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 ABCA12Q86UK0 2595 aa12.74□□□□□ -0.37
VPS9D1-204ENST00000565023 ITPR2Q14571 2701 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 GLRA3O75311 464 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 GP1BBP13224 206 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 CD46P15529 392 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 TNNI3P19429 210 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 CPN2P22792 545 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 ATP5A1P25705 553 aaKnown RBP12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 CRHR1P34998 444 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 CLCN2P51788 898 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 NEK2P51955 445 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 HSD17B7P56937 341 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 SLC18A2Q05940 514 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 STX4Q12846 297 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 RCN2Q14257 317 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 MAPKAPK3Q16644 382 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 CHSY3Q70JA7 882 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 RPS27LQ71UM5 84 aaKnown RBP12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 GALNTL5Q7Z4T8 443 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 SCUBE1Q8IWY4 988 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 OR4N5Q8IXE1 308 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 ZNF595Q8IYB9 648 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 ACOT4Q8N9L9 421 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 SRFBP1Q8NEF9 429 aaKnown RBP12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 B3GNT7Q8NFL0 401 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 ADAMTS18Q8TE60 1221 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 NR4A3Q92570 626 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 NCLNQ969V3 563 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 CMTM7Q96FZ5 175 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 SLX1AQ9BQ83 275 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 TBCDQ9BTW9 1192 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 ROGDIQ9GZN7 287 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 NOL11Q9H8H0 719 aaKnown RBP12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 IPPKQ9H8X2 491 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 LIN28AQ9H9Z2 209 aaKnown RBP12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 LRFN1Q9P244 771 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 SH3BGRL2Q9UJC5 107 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 SLC5A6Q9Y289 635 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 RNF11Q9Y3C5 154 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 SPACA6W5XKT8 324 aa12.73□□□□□ -0.37
VPS9D1-204ENST00000565023 CROCCQ5TZA2 2017 aa12.72□□□□□ -0.37
VPS9D1-204ENST00000565023 CCDC151A5D8V7 595 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms