RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 ITGADQ13349 1161 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 LAMB3Q13751 1172 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 TRIP10Q15642 601 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 CHRNA6Q15825 494 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 AANATQ16613 207 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 ALKBH6Q3KRA9 238 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 PLK5Q496M5 336 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 PCID2Q5JVF3 399 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 SPANXN2Q5MJ10 180 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 C6orf10Q5SRN2 563 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 LYSMD4Q5XG99 296 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 DHRS13Q6UX07 377 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF517Q6ZMY9 492 aaPredicted RBP4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 BZW1Q7L1Q6 419 aaKnown RBP4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 PHLDB2Q86SQ0 1253 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 TMPRSS11BQ86T26 416 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 TMPRSS12Q86WS5 348 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 CCDC65Q8IXS2 484 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 EFCAB13Q8IY85 973 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 GPR135Q8IZ08 494 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 KRT222Q8N1A0 295 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 CRYBG2Q8N1P7 616 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 THEM5Q8N1Q8 247 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 COMMD1Q8N668 190 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 BEST2Q8NFU1 509 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 OR1J2Q8NGS2 313 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 CLHC1Q8NHS4 586 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 PNPT1Q8TCS8 783 aaKnown RBP4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 NEU4Q8WWR8 484 aaPredicted RBP4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 PIBF1Q8WXW3 757 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 HAS2Q92819 552 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 GGHQ92820 318 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 SNAPC3Q92966 411 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 C7orf34Q96L11 122 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 TMEM79Q9BSE2 394 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 TEKT3Q9BXF9 490 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 SCAND2PQ9GZW5 306 aaPredicted RBP4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 PORCNQ9H237 461 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 MEAF6Q9HAF1 191 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 CDH20Q9HBT6 801 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 LZTFL1Q9NQ48 299 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 FLRT1Q9NZU1 646 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 CHMP5Q9NZZ3 219 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 WNT16Q9UBV4 365 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 NDRG3Q9UGV2 375 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 AMFRQ9UKV5 643 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 FOXJ3Q9UPW0 622 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 GRIP1Q9Y3R0 1128 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 NFASCO94856 1347 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 MBLAC1A4D2B0 266 aaPredicted RBP4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 TMEM202A6NGA9 273 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 TMEM200CA6NKL6 621 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 GABRR3A8MPY1 467 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 RSPH10B2B2RC85 870 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 TCP11X1B4DZS4 312 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 TMEM189-UBE2V1I3L0A0 370 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 M0QZ24 198 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 WBP4O75554 376 aaKnown RBP4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 SERPINI2O75830 405 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 SMC2O95347 1197 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 TGM6O95932 706 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 CLTAP09496 248 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 OR2T7P0C7T2 308 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 RSPH10BP0C881 870 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 ITGB6P18564 788 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 TPSB2P20231 275 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 FPR3P25089 353 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 GJB2P29033 226 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 MAP3K7CLP57077 242 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 TPM4P67936 248 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 PDE1BQ01064 536 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 OTUD4Q01804 1114 aaKnown RBP4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 MAB21L1Q13394 359 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 UBE2V1Q13404 147 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 TPSAB1Q15661 275 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 PLAC9Q5JTB6 97 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 AGAP6Q5VW22 663 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 TTC23Q5W5X9 447 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 OR7E24Q6IFN5 339 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 FAM166AQ6J272 317 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 ANKRD54Q6NXT1 300 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 FAM159AQ6UWV7 190 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 METTL7BQ6UX53 244 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 STXBP4Q6ZWJ1 553 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 ANO5Q75V66 913 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 PLA2G4DQ86XP0 818 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 D2HGDHQ8N465 521 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 HDAC7Q8WUI4 952 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 ASZ1Q8WWH4 475 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 OR1E3Q8WZA6 343 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 ANKRD7Q92527 254 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 REPS1Q96D71 796 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 ART5Q96L15 291 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 CHP1Q99653 195 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 SH3GL1Q99961 368 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 UQCC2Q9BRT2 126 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 C1QTNF3Q9BXJ4 246 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 FRMD8P1Q9BZ68 369 aaPredicted RBP4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 ACTR5Q9H9F9 607 aaPredicted RBP4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 Q9N2K0 584 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms