RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CEP290O15078 2479 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 FAM240BA0A1B0GVZ2 78 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 A0A1W2PQL4 384 aaPredicted RBP12.73□□□□□ -0.37
CLK3-206ENST00000562078 GRXCR1A8MXD5 290 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 TBL1XO60907 577 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 ADAM11O75078 769 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 WISP3O95389 354 aaPredicted RBP12.73□□□□□ -0.37
CLK3-206ENST00000562078 RETP07949 1114 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 PCSK2P16519 638 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 NUP62P37198 522 aaPredicted RBP12.73□□□□□ -0.37
CLK3-206ENST00000562078 STC1P52823 247 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 CSNK2BP67870 215 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 RUNX1T1Q06455 604 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 LCP2Q13094 533 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 TIMM50Q3ZCQ8 353 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 C19orf48Q6RUI8 117 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 MSRB3Q8IXL7 192 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 TCEAL8Q8IYN2 117 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 ATP6V1C2Q8NEY4 427 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 OR7G3Q8NG95 312 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 OR4K2Q8NGD2 314 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 CDC26Q8NHZ8 85 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 POF1BQ8WVV4 589 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 ASB12Q8WXK4 309 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 USP7Q93009 1102 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 WBP1Q96G27 269 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 ZSWIM3Q96MP5 696 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 TMEM245Q9H330 911 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 RBFOX1Q9NWB1 397 aaKnown RBP12.73□□□□□ -0.37
CLK3-206ENST00000562078 HPF1Q9NWY4 346 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 SLC25A37Q9NYZ2 338 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 ZNF225Q9UK10 706 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 CACNG2Q9Y698 323 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 TP53BP1Q12888 1972 aaPredicted RBP12.73□□□□□ -0.37
CLK3-206ENST00000562078 CCDC85CA6NKD9 419 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 HNRNPCL2B2RXH8 293 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 ARNTLO00327 626 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 TGM5O43548 720 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 RNGTTO60942 597 aaKnown RBP12.72□□□□□ -0.37
CLK3-206ENST00000562078 CYP17A1P05093 508 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 FAM157BP0CG42 384 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 CD1DP15813 335 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 RAB3AP20336 220 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 FDXRP22570 491 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 CLDN20P56880 219 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 ABATP80404 500 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 COX10Q12887 443 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 FCN2Q15485 313 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 TXNDC8Q6A555 127 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 KRT73Q86Y46 540 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 ARL14EPQ8N8R7 260 aaPredicted RBP12.72□□□□□ -0.37
CLK3-206ENST00000562078 MDGA1Q8NFP4 955 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 GPR150Q8NGU9 434 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 CDKN2AIPNLQ96HQ2 116 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 ZCCHC4Q9H5U6 513 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 SLAMF7Q9NQ25 335 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 NLE1Q9NVX2 485 aaPredicted RBP12.72□□□□□ -0.37
CLK3-206ENST00000562078 CUEDC1Q9NWM3 386 aaPredicted RBP12.72□□□□□ -0.37
CLK3-206ENST00000562078 ING4Q9UNL4 249 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 FNDC3AQ9Y2H6 1198 aaKnown RBP12.72□□□□□ -0.37
CLK3-206ENST00000562078 PCDHGA9Q9Y5G4 932 aaKnown RBP12.72□□□□□ -0.37
CLK3-206ENST00000562078 RAI2Q9Y5P3 530 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 CHD7Q9P2D1 2997 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 SMIM30A4D0T7 59 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 PROM1O43490 865 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 TSPAN12O95859 305 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 IFNA7P01567 189 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 OGNP20774 298 aaKnown RBP12.72□□□□□ -0.37
CLK3-206ENST00000562078 APEX1P27695 318 aaKnown RBP12.72□□□□□ -0.37
CLK3-206ENST00000562078 SOX3P41225 446 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 ZXDBP98169 803 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 TIAL1Q01085 375 aaKnown RBP eCLIP12.72□□□□□ -0.37
CLK3-206ENST00000562078 C2orf80Q0P641 193 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 PTPRRQ15256 657 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 COL28A1Q2UY09 1125 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 ZNF284Q2VY69 593 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 FRMPD2BQ6IN97 320 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 SPRED2Q7Z698 418 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 ATOH1Q92858 354 aaPredicted RBP12.72□□□□□ -0.37
CLK3-206ENST00000562078 HRASLS5Q96KN8 279 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 CCM2Q9BSQ5 444 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 HECAQ9UBI9 543 aaPredicted RBP12.72□□□□□ -0.37
CLK3-206ENST00000562078 RNF112Q9ULX5 631 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 SAMHD1Q9Y3Z3 626 aaKnown RBP12.72□□□□□ -0.37
CLK3-206ENST00000562078 FKBP7Q9Y680 259 aa12.72□□□□□ -0.37
CLK3-206ENST00000562078 A0A1W2PPL8 197 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 HIDE1A8MVS5 230 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 GMDSO60547 372 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 CD160O95971 181 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 IFNA14P01570 189 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 LRG1P02750 347 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 PTX3P26022 381 aaPredicted RBP12.71□□□□□ -0.37
CLK3-206ENST00000562078 DNAJA1P31689 397 aaKnown RBP12.71□□□□□ -0.37
CLK3-206ENST00000562078 MAGEA2P43356 314 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 IDH2P48735 452 aaKnown RBP12.71□□□□□ -0.37
CLK3-206ENST00000562078 RAB14P61106 215 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 SCRN3Q0VDG4 424 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 LRRC66Q68CR7 880 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 FAM109BQ6ICB4 259 aaPredicted RBP12.71□□□□□ -0.37
CLK3-206ENST00000562078 ZNF367Q7RTV3 350 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms