RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 TTLQ8NG68 377 aa17.13■□□□□ 0.33
TPM1-226ENST00000560959 OR14A16Q8NHC5 309 aa17.13■□□□□ 0.33
TPM1-226ENST00000560959 GABPB2Q8TAK5 448 aaPredicted RBP17.13■□□□□ 0.33
TPM1-226ENST00000560959 LINGO1Q96FE5 620 aa17.13■□□□□ 0.33
TPM1-226ENST00000560959 BEX4Q9NWD9 120 aaPredicted RBP17.13■□□□□ 0.33
TPM1-226ENST00000560959 QPCTLQ9NXS2 382 aa17.13■□□□□ 0.33
TPM1-226ENST00000560959 TUBA8Q9NY65 449 aaPredicted RBP17.13■□□□□ 0.33
TPM1-226ENST00000560959 DYRK1BQ9Y463 629 aa17.13■□□□□ 0.33
TPM1-226ENST00000560959 KCNE2Q9Y6J6 123 aa17.13■□□□□ 0.33
TPM1-226ENST00000560959 AHRRA9YTQ3 701 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 CTNSO60931 367 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 ENDOUP21128 410 aaKnown RBP17.12■□□□□ 0.33
TPM1-226ENST00000560959 TIMP3P35625 211 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 DNASE1L1P49184 302 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 RNF4P78317 190 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 CCZ1BP86790 482 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 CCZ1P86791 482 aaPredicted RBP17.12■□□□□ 0.33
TPM1-226ENST00000560959 RCN2Q14257 317 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 EFTUD2Q15029 972 aaKnown RBP eCLIP17.12■□□□□ 0.331e-5■■■□□ 16.7
TPM1-226ENST00000560959 MPEG1Q2M385 716 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 HSP90AA5PQ58FG0 334 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 ANKRD22Q5VYY1 191 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 Q71RC1 249 aaPredicted RBP17.12■□□□□ 0.33
TPM1-226ENST00000560959 KIF18BQ86Y91 864 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 TMEM139Q8IV31 216 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 PTPMT1Q8WUK0 201 aaPredicted RBP17.12■□□□□ 0.33
TPM1-226ENST00000560959 NDNQ99608 321 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 EXO5Q9H790 373 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 SPRR3Q9UBC9 169 aa17.12■□□□□ 0.33
TPM1-226ENST00000560959 LRIT2A6NDA9 550 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 TUBAL3A6NHL2 446 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 CYR61O00622 381 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 EPPINO95925 133 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 CCL3P10147 92 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 BMP5P22003 454 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 HPDP32754 393 aaPredicted RBP17.11■□□□□ 0.33
TPM1-226ENST00000560959 MAGEA3P43357 314 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 HNRNPFP52597 415 aaKnown RBP17.11■□□□□ 0.33
TPM1-226ENST00000560959 GPS1Q13098 491 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 PIGGQ5H8A4 983 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 TMEM198Q66K66 360 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 CHSY3Q70JA7 882 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 THOC6Q86W42 341 aaKnown RBP17.11■□□□□ 0.33
TPM1-226ENST00000560959 TMEM52Q8NDY8 209 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 MS4A6EQ96DS6 147 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 PDLIM5Q96HC4 596 aaKnown RBP17.11■□□□□ 0.33
TPM1-226ENST00000560959 TSNARE1Q96NA8 513 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 SERPINB12Q96P63 405 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 SH2D2AQ9NP31 389 aa17.11■□□□□ 0.33
TPM1-226ENST00000560959 IARS2Q9NSE4 1012 aaKnown RBP17.11■□□□□ 0.33
TPM1-226ENST00000560959 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.11■□□□□ 0.33
TPM1-226ENST00000560959 B3GALT2O43825 422 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 FGGP02679 453 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 IFNA16P05015 189 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 TACR1P25103 407 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 ZNF75DP51815 510 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 CDKN2DP55273 166 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 SORDQ00796 357 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 SERTAD2Q14140 314 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 FBXW10Q5XX13 1052 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 SLC22A10Q63ZE4 541 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 POMZP3Q6PJE2 187 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 KRTAP1-3Q8IUG1 177 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 KLHDC8AQ8IYD2 350 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 LRRC25Q8N386 305 aaPredicted RBP17.1■□□□□ 0.33
TPM1-226ENST00000560959 NEIL3Q8TAT5 605 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 SIGLEC10Q96LC7 697 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 QRFPRQ96P65 431 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 DESI2Q9BSY9 194 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 ALOXE3Q9BYJ1 711 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 ZNF703Q9H7S9 590 aaPredicted RBP17.1■□□□□ 0.33
TPM1-226ENST00000560959 ZFP64Q9NPA5 681 aa17.1■□□□□ 0.33
TPM1-226ENST00000560959 SEMA4BQ9NPR2 832 aaPredicted RBP17.1■□□□□ 0.33
TPM1-226ENST00000560959 ERI3O43414 337 aaKnown RBP17.09■□□□□ 0.33
TPM1-226ENST00000560959 NRDCO43847 1150 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 ZNF354AO60765 605 aaPredicted RBP17.09■□□□□ 0.33
TPM1-226ENST00000560959 H2AFYO75367 372 aaKnown RBP17.09■□□□□ 0.33
TPM1-226ENST00000560959 GUCA1CO95843 209 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 CD53P19397 219 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 SAT1P21673 171 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 GABRB3P28472 473 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 DCAF7P61962 342 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 NKX6-1P78426 367 aaPredicted RBP17.09■□□□□ 0.33
TPM1-226ENST00000560959 SF3B4Q15427 424 aaKnown RBP eCLIP17.09■□□□□ 0.331e-9■■□□□ 12.9
TPM1-226ENST00000560959 TRIP13Q15645 432 aaPredicted RBP17.09■□□□□ 0.33
TPM1-226ENST00000560959 ZNF791Q3KP31 576 aaPredicted RBP17.09■□□□□ 0.33
TPM1-226ENST00000560959 ADPRMQ3LIE5 342 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 GALNT7Q86SF2 657 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 TMPRSS11BQ86T26 416 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 PRIMA1Q86XR5 153 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 LACC1Q8IV20 430 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 DND1Q8IYX4 353 aaKnown RBP17.09■□□□□ 0.33
TPM1-226ENST00000560959 SLC15A4Q8N697 577 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 NAXEQ8NCW5 288 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 SPATA3Q8NHX4 192 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 NUBPLQ8TB37 319 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 PAQR8Q8TEZ7 354 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 KIAA1191Q96A73 305 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 SERINC2Q96SA4 455 aa17.09■□□□□ 0.33
TPM1-226ENST00000560959 MDFIQ99750 246 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms