RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	NPAS2	Q99743	824 aa		13.14	□□□□□ -0.31
TPM1-223	ENST00000560445	ACTR8	Q9H981	624 aa		13.14	□□□□□ -0.31
TPM1-223	ENST00000560445	WDR41	Q9HAD4	459 aa		13.14	□□□□□ -0.31
TPM1-223	ENST00000560445	NPIPA1	Q9UND3	350 aa		13.14	□□□□□ -0.31
TPM1-223	ENST00000560445		A0A0G2JN53	185 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445		A8MUA0	341 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445		A8MVJ9	347 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	KIF2A	O00139	706 aa	Predicted RBP	13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	ASNA1	O43681	348 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	ITGA10	O75578	1167 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	INHBA	P08476	426 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	PTX3	P26022	381 aa	Predicted RBP	13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	TYK2	P29597	1187 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	BUD31	P41223	144 aa	Predicted RBP	13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	SERPINB9	P50453	376 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	PLIN5	Q00G26	463 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	PMP22	Q01453	160 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	SLC7A5	Q01650	507 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	GUCY2D	Q02846	1103 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	SETDB1	Q15047	1291 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	UAP1	Q16222	522 aa	Predicted RBP	13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	TSNAXIP1	Q2TAA8	658 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	MROH9	Q5TGP6	573 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445		Q6ZPB1	254 aa	Predicted RBP	13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	MRGPRG	Q86SM5	289 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	RELL1	Q8IUW5	271 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	DND1	Q8IYX4	353 aa	Known RBP	13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	ACOT4	Q8N9L9	421 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	OR7G3	Q8NG95	312 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	ZNF473	Q8WTR7	871 aa	Known RBP	13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	ASB15	Q8WXK1	588 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	NCLN	Q969V3	563 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	CCDC120	Q96HB5	630 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	F2RL3	Q96RI0	385 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	ACSS3	Q9H6R3	686 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	SNX15	Q9NRS6	342 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	HPF1	Q9NWY4	346 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	LYAR	Q9NX58	379 aa	Known RBP	13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	VTI1B	Q9UEU0	232 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	ZNF490	Q9ULM2	529 aa	Predicted RBP	13.13	□□□□□ -0.31
TPM1-223	ENST00000560445	MYO7B	Q6PIF6	2116 aa		13.13	□□□□□ -0.31
TPM1-223	ENST00000560445		A0A096LPK6	155 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	ENO4	A6NNW6	628 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	C4orf51	C9J302	202 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	UBXN8	O00124	270 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	CYR61	O00622	381 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	DNAJB6	O75190	326 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	KRT38	O76015	456 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	KLHL2	O95198	593 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	C1QA	P02745	245 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	C2	P06681	752 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	RBP1	P09455	135 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	CPN2	P22792	545 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	ATP5A1	P25705	553 aa	Known RBP	13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	PTGER4	P35408	488 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	GLE1	Q53GS7	698 aa	Known RBP	13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	ZNF787	Q6DD87	383 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	OPN5	Q6U736	354 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	GK5	Q6ZS86	529 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	VN1R5	Q7Z5H4	357 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	ZCCHC7	Q8N3Z6	543 aa	Known RBP	13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	TEX9	Q8N6V9	391 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	PHF10	Q8WUB8	498 aa	Known RBP	13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	TANK	Q92844	425 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	ESAM	Q96AP7	390 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	SGCZ	Q96LD1	299 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	LRRC1	Q9BTT6	524 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	ALOXE3	Q9BYJ1	711 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	AICDA	Q9GZX7	198 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	PRDM7	Q9NQW5	492 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	IGSF5	Q9NSI5	407 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	PSD3	Q9NYI0	1048 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	MYOT	Q9UBF9	498 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	ZNF835	Q9Y2P0	537 aa		13.12	□□□□□ -0.31
TPM1-223	ENST00000560445	MYO9A	B2RTY4	2548 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	CTAGE15	A4D2H0	777 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	C17orf105	B2RV13	164 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445		H0YIV9	168 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	PEX1	O43933	1283 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	SMIM24	O75264	130 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	FAM155B	O75949	473 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	COL6A2	P12110	1019 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	CD22	P20273	847 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	ARL1	P40616	181 aa	Predicted RBP	13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	MEOX1	P50221	254 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	CUL3	Q13618	768 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	PCBP2	Q15366	365 aa	Known RBP eCLIP	13.11	□□□□□ -0.31	2e-12	■■■■□ 19.4
TPM1-223	ENST00000560445	PFKFB4	Q16877	469 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	DEPDC1	Q5TB30	811 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	LGSN	Q5TDP6	509 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	HIST2H2BC	Q6DN03	193 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	OR4C11	Q6IEV9	310 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	ARHGAP11A	Q6P4F7	1023 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	RTL4	Q6ZR62	310 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	CLNK	Q7Z7G1	428 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	CTAGE6	Q86UF2	777 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	SIAH3	Q8IW03	269 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	ZFP62	Q8NB50	900 aa	Predicted RBP	13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	GOLM1	Q8NBJ4	401 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	KCTD4	Q8WVF5	259 aa		13.11	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms