RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 C18orf63Q68DL7 685 aa16.5■□□□□ 0.23
HDDC3-205ENST00000559898 GRHL2Q6ISB3 625 aa16.5■□□□□ 0.23
HDDC3-205ENST00000559898 MED27Q6P2C8 311 aa16.5■□□□□ 0.23
HDDC3-205ENST00000559898 SULF2Q8IWU5 870 aa16.5■□□□□ 0.23
HDDC3-205ENST00000559898 ZNF595Q8IYB9 648 aa16.5■□□□□ 0.23
HDDC3-205ENST00000559898 TMEM178AQ8NBL3 297 aa16.5■□□□□ 0.23
HDDC3-205ENST00000559898 ARMC2Q8NEN0 867 aa16.5■□□□□ 0.23
HDDC3-205ENST00000559898 HUS1BQ8NHY5 278 aa16.5■□□□□ 0.23
HDDC3-205ENST00000559898 ZNF592Q92610 1267 aa16.5■□□□□ 0.23
HDDC3-205ENST00000559898 VMP1Q96GC9 406 aa16.5■□□□□ 0.23
HDDC3-205ENST00000559898 MTERF1Q99551 399 aaKnown RBP16.5■□□□□ 0.23
HDDC3-205ENST00000559898 ZNF835Q9Y2P0 537 aa16.5■□□□□ 0.23
HDDC3-205ENST00000559898 A0A087X1B8 175 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 A0A1W2PS29 197 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 PRSS44E7EML9 344 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 WWP2O00308 870 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 PLPP1O14494 284 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 FGF17O60258 216 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 KLK8O60259 260 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 CTNSO60931 367 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 OR2J2O76002 312 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 OR6B1O95007 311 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 ACSL3O95573 720 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 IFNA16P05015 189 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 HIST1H1TP22492 207 aaPredicted RBP16.49■□□□□ 0.23
HDDC3-205ENST00000559898 HNRNPH2P55795 449 aaKnown RBP16.49■□□□□ 0.23
HDDC3-205ENST00000559898 RPS13P62277 151 aaKnown RBP16.49■□□□□ 0.23
HDDC3-205ENST00000559898 CKAP4Q07065 602 aaKnown RBP16.49■□□□□ 0.23
HDDC3-205ENST00000559898 ILF2Q12905 390 aaKnown RBP16.49■□□□□ 0.23
HDDC3-205ENST00000559898 LAPTM5Q13571 262 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 HIST2H2ACQ16777 129 aaPredicted RBP16.49■□□□□ 0.23
HDDC3-205ENST00000559898 SP5Q6BEB4 398 aaPredicted RBP16.49■□□□□ 0.23
HDDC3-205ENST00000559898 HIST2H2AA3Q6FI13 130 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 GOLGA7Q7Z5G4 137 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 ADAMTS18Q8TE60 1221 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 PPWD1Q96BP3 646 aaKnown RBP16.49■□□□□ 0.23
HDDC3-205ENST00000559898 SEC16BQ96JE7 1060 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 KCNC2Q96PR1 638 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 CDK15Q96Q40 435 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 ZNF717Q9BY31 904 aaPredicted RBP16.49■□□□□ 0.23
HDDC3-205ENST00000559898 VPS11Q9H270 941 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 ACSS3Q9H6R3 686 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 ADAP2Q9NPF8 381 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 CPSF2Q9P2I0 782 aaKnown RBP16.49■□□□□ 0.23
HDDC3-205ENST00000559898 RNF11Q9Y3C5 154 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 HRH3Q9Y5N1 445 aa16.49■□□□□ 0.23
HDDC3-205ENST00000559898 FBN2P35556 2912 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 A0A1B0GTL3 188 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 G3V3Y1 287 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 CLDN4O14493 209 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 ASNA1O43681 348 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 EEDO75530 441 aaKnown RBP16.48■□□□□ 0.23
HDDC3-205ENST00000559898 KLHL2O95198 593 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 EPB42P16452 691 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 NEK2P51955 445 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 PCDH1Q08174 1060 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 NAA30Q147X3 362 aaPredicted RBP16.48■□□□□ 0.23
HDDC3-205ENST00000559898 TECRLQ5HYJ1 363 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 PAGE2BQ5JRK9 111 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 DEPDC1Q5TB30 811 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 KHDRBS2Q5VWX1 349 aaKnown RBP16.48■□□□□ 0.23
HDDC3-205ENST00000559898 MRGPRGQ86SM5 289 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 MYLK4Q86YV6 388 aaPredicted RBP16.48■□□□□ 0.23
HDDC3-205ENST00000559898 SPPL2CQ8IUH8 684 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 CYP4Z2PQ8N1L4 340 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 MMGT1Q8N4V1 131 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 RHEBL1Q8TAI7 183 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 IFT81Q8WYA0 676 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 NSUN5Q96P11 429 aaKnown RBP16.48■□□□□ 0.23
HDDC3-205ENST00000559898 PHF12Q96QT6 1004 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 TBCDQ9BTW9 1192 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 OR8D2Q9GZM6 311 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 LYRM4Q9HD34 91 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 PRM3Q9NNZ6 103 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 DMRT3Q9NQL9 472 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 VTI1BQ9UEU0 232 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 ATG4BQ9Y4P1 393 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 NCKAP5O14513 1909 aa16.48■□□□□ 0.23
HDDC3-205ENST00000559898 NOTCH2Q04721 2471 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 C17orf105B2RV13 164 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 C19orf84I3L1E1 186 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 FCHO1O14526 889 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 OR7A17O14581 309 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 PEX1O43933 1283 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 TMPRSS11DO60235 418 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 HS6ST1O60243 411 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 SCELO95171 688 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 MYBL2P10244 700 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 GFAPP14136 432 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 CPN2P22792 545 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 TYK2P29597 1187 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 SOX3P41225 446 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 SSR2P43308 183 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 MAGEA12P43365 314 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 HK2P52789 917 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 SLAMF1Q13291 335 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 ACAP2Q15057 778 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 TERF2Q15554 542 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 ELAVL1Q15717 326 aaKnown RBP16.47■□□□□ 0.23
HDDC3-205ENST00000559898 ZNF750Q32MQ0 723 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms