RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 NEPROQ6NW34 567 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 C4orf22Q6V702 233 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 SEM1Q6ZVN7 128 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 CNGA4Q8IV77 575 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 PM20D2Q8IYS1 436 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 CA13Q8N1Q1 262 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 VWA5B2Q8N398 1253 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 UBL4BQ8N7F7 174 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 MORN4Q8NDC4 146 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 C7orf57Q8NEG2 295 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 TRPV3Q8NET8 790 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 OR8K3Q8NH51 312 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 NEIL3Q8TAT5 605 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 MFSD3Q96ES6 412 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 HSPBAP1Q96EW2 488 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 SNF8Q96H20 258 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 SMIM10Q96HG1 83 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 PDLIM2Q96JY6 352 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 FAR2Q96K12 515 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 AARSD1Q9BTE6 412 aaKnown RBP4.78□□□□□ -1.64
SPG11-208ENST00000558155 KIFC1Q9BW19 673 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 NPLQ9BXD5 320 aaPredicted RBP4.78□□□□□ -1.64
SPG11-208ENST00000558155 KRTAP4-8Q9BYQ9 185 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 TRIM54Q9BYV2 358 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 FRMD8P1Q9BZ68 369 aaPredicted RBP4.78□□□□□ -1.64
SPG11-208ENST00000558155 TSGA10Q9BZW7 698 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 PARVBQ9HBI1 364 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 ZFP64Q9NPA5 681 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 ADAP2Q9NPF8 381 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 INTS10Q9NVR2 710 aaKnown RBP4.78□□□□□ -1.64
SPG11-208ENST00000558155 PAK5Q9P286 719 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 SPRR3Q9UBC9 169 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 ZFP69BQ9UJL9 534 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 ZNF223Q9UK11 482 aaPredicted RBP4.78□□□□□ -1.64
SPG11-208ENST00000558155 AMFRQ9UKV5 643 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 BOKQ9UMX3 212 aaPredicted RBP4.78□□□□□ -1.64
SPG11-208ENST00000558155 MRPS33Q9Y291 106 aaKnown RBP4.78□□□□□ -1.64
SPG11-208ENST00000558155 ATG4BQ9Y4P1 393 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 MAD1L1Q9Y6D9 718 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 COMMD10Q9Y6G5 202 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 DSCAMO60469 2012 aa4.78□□□□□ -1.64
SPG11-208ENST00000558155 A0A088AWK7 358 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 C15orf38-AP3S2A0A0A6YYH1 394 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 MAGEB16A2A368 324 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 SH3D21A4FU49 640 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 TRIM64A6NGJ6 449 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 TRIM64BA6NI03 449 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 CD8B2A6NJW9 211 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 EEF1E1-BLOC1S5C9J1V9 151 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 AKR1B15C9JRZ8 316 aaPredicted RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 EEF1E1O43324 174 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 PRKNO60260 465 aaPredicted RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 CTNSO60931 367 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 MFAP3LO75121 409 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 H2AFYO75367 372 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 ERN1O75460 977 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 CNOT4O95628 575 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 C8GP07360 202 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 SERPINA6P08185 405 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 ETS1P14921 441 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 ENDOUP21128 410 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 ZNF10P21506 573 aaPredicted RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 RPL22P35268 128 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 CYLC1P35663 651 aaPredicted RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 PIGAP37287 484 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 RPL21P46778 160 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 SCTRP47872 440 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 TRPC1P48995 793 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 RGS4P49798 205 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 AGFG1P52594 562 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 ZNF136P52737 540 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 HK2P52789 917 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 STXBP1P61764 594 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 KCNJ2P63252 427 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 RNF4P78317 190 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 BTN3A2P78410 334 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 STX4Q12846 297 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 KLF1Q13351 362 aaPredicted RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 CUL1Q13616 776 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 THOC5Q13769 683 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 ELAVL1Q15717 326 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 MPEG1Q2M385 716 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 ACSF3Q4G176 576 aaPredicted RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 PIGGQ5H8A4 983 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 ARMC3Q5W041 872 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 NSUN5P2Q63ZY6 315 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 DUPD1Q68J44 220 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 CAVIN1Q6NZI2 390 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 POMZP3Q6PJE2 187 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 CES3Q6UWW8 571 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 SYDE1Q6ZW31 735 aaPredicted RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 CENPUQ71F23 418 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 PEX26Q7Z412 305 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 CILP2Q8IUL8 1156 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 VSTM4Q8IW00 320 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 SCUBE1Q8IWY4 988 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 ZNF595Q8IYB9 648 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 CCDC170Q8IYT3 715 aa4.77□□□□□ -1.65
SPG11-208ENST00000558155 DND1Q8IYX4 353 aaKnown RBP4.77□□□□□ -1.65
SPG11-208ENST00000558155 RASGEF1CQ8N431 466 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms