RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	LRIT2	A6NDA9	550 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	HSPB2	A8KAH6	182 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	B3GALT2	O43825	422 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	CTNS	O60931	367 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	CELA3A	P09093	270 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	ZNF10	P21506	573 aa	Predicted RBP	11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	HNRNPF	P52597	415 aa	Known RBP	11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	LTB	Q06643	244 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	HSPB2	Q16082	182 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	OPN5	Q6U736	354 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	CLNK	Q7Z7G1	428 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	BIVM	Q86UB2	503 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	KLHDC8A	Q8IYD2	350 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	FAM47B	Q8NA70	645 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	TMEM52	Q8NDY8	209 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	TTL	Q8NG68	377 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	OR5L2	Q8NGL0	311 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	SREK1	Q8WXA9	508 aa	Known RBP	11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	SLCO2A1	Q92959	643 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	MS4A6E	Q96DS6	147 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	ALOXE3	Q9BYJ1	711 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	VTI1B	Q9UEU0	232 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	VWA7	Q9Y334	891 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	ABCA4	P78363	2273 aa		11.71	□□□□□ -0.54
SHMT2-223	ENST00000556689	CYR61	O00622	381 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	ERI3	O43414	337 aa	Known RBP	11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	C1GALT1C1L	P0DN25	315 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	TNNI3	P19429	210 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	CASQ1	P31415	396 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	CXCR5	P32302	372 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	DNASE1L1	P49184	302 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	RNF4	P78317	190 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	RCN2	Q14257	317 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	EFTUD2	Q15029	972 aa	Known RBP eCLIP	11.7	□□□□□ -0.54	5e-8	■■■■■ 50.3
SHMT2-223	ENST00000556689	DAZAP2	Q15038	168 aa	Predicted RBP	11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	FLYWCH1	Q4VC44	716 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	FBXW10	Q5XX13	1052 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	TTC27	Q6P3X3	843 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	OR8K3	Q8NH51	312 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	OR14A16	Q8NHC5	309 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	PTPMT1	Q8WUK0	201 aa	Predicted RBP	11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	CCT6B	Q92526	530 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	MAGOHB	Q96A72	148 aa	Known RBP	11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	PDLIM5	Q96HC4	596 aa	Known RBP	11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	OR8D2	Q9GZM6	311 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	TUBA8	Q9NY65	449 aa	Predicted RBP	11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	CBLC	Q9ULV8	474 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	JRKL	Q9Y4A0	524 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	ATG4B	Q9Y4P1	393 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	PCDHGB3	Q9Y5G1	929 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	ANKHD1	Q8IWZ3	2542 aa	Known RBP	11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	ZNF407	Q9C0G0	2248 aa		11.7	□□□□□ -0.54
SHMT2-223	ENST00000556689	MYOCOS	A0A1B0GUC4	107 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	TTC4	O95801	387 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	RAF1	P04049	648 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	CCL3	P10147	92 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	PGAM1	P18669	254 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	GNAZ	P19086	355 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	GSTM2	P28161	218 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	HNRNPH1	P31943	449 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	HPD	P32754	393 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	PGGT1B	P53609	377 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	PLA2G16	P53816	162 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	LIM2	P55344	173 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	STX4	Q12846	297 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	KEAP1	Q14145	624 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	CRYM	Q14894	314 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	DEFB113	Q30KQ7	82 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	PIGG	Q5H8A4	983 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	SLC22A10	Q63ZE4	541 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	SBSN	Q6UWP8	590 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	TMIGD1	Q6UXZ0	262 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	CNTN4	Q8IWV2	1026 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	C17orf53	Q8N3J3	647 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	FBXW8	Q8N3Y1	598 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	ZNF321P	Q8N8H1	164 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	NAT8L	Q8N9F0	302 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	RNASE6	Q93091	150 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	QRFPR	Q96P65	431 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	SERINC2	Q96SA4	455 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	NAPG	Q99747	312 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	REXO4	Q9GZR2	422 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	SEMA4B	Q9NPR2	832 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	DMRT3	Q9NQL9	472 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	SPRR3	Q9UBC9	169 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	FOXD3	Q9UJU5	478 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	DAPP1	Q9UN19	280 aa		11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-223	ENST00000556689	ANKDD1B	A6NHY2	528 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	AHRR	A9YTQ3	701 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	C17orf105	B2RV13	164 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	DVL2	O14641	736 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	ZNF500	O60304	480 aa	Predicted RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	ZNF354A	O60765	605 aa	Predicted RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	CLEC3A	O75596	197 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	ENDOU	P21128	410 aa	Known RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	BMP5	P22003	454 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	ADSL	P30566	484 aa	Predicted RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	PIGA	P37287	484 aa		11.68	□□□□□ -0.54

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