RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 UGT3A1Q6NUS8 523 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 NIPAL1Q6NVV3 410 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 LETMD1Q6P1Q0 360 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 TTC27Q6P3X3 843 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 AGTRAPQ6RW13 159 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 LCTLQ6UWM7 567 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 GALNT7Q86SF2 657 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 ASPGQ86U10 573 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 C17orf64Q86WR6 236 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 CNTN4Q8IWV2 1026 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 ZZZ3Q8IYH5 903 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 SLC5A8Q8N695 610 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 NAT8LQ8N9F0 302 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 SPC24Q8NBT2 197 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 WFDC11Q8NEX6 87 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 PHF10Q8WUB8 498 aaKnown RBP9.36□□□□□ -0.91
SCFD1-220ENST00000556486 RNF141Q8WVD5 230 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 LPAR4Q99677 370 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 HAUS8Q9BT25 410 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 FAM167BQ9BTA0 163 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 POLDIP3Q9BY77 421 aaKnown RBP9.36□□□□□ -0.91
SCFD1-220ENST00000556486 PRDM14Q9GZV8 571 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 TRIM45Q9H8W5 580 aaPredicted RBP9.36□□□□□ -0.91
SCFD1-220ENST00000556486 CLK4Q9HAZ1 481 aaKnown RBP9.36□□□□□ -0.91
SCFD1-220ENST00000556486 PARVBQ9HBI1 364 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 ANKHQ9HCJ1 492 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 ST6GALNAC2Q9UJ37 374 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 PDE10AQ9Y233 779 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 GPR55Q9Y2T6 319 aaPredicted RBP9.36□□□□□ -0.91
SCFD1-220ENST00000556486 ACTL7BQ9Y614 415 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 SCN3AQ9NY46 2000 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 GABRR3A8MPY1 467 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 SGK494L7N484 410 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 LCMT2O60294 686 aaKnown RBP9.35□□□□□ -0.91
SCFD1-220ENST00000556486 NEURL1O76050 574 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 PDE9AO76083 593 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 HAUS5O94927 633 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 KRT14P02533 472 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 SP1P08047 785 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 NAT1P18440 290 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 GRK3P35626 688 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 VPS41P49754 854 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 RGS4P49798 205 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 AP1S2P56377 157 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 SKP1P63208 163 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 MEF2AQ02078 507 aaPredicted RBP9.35□□□□□ -0.91
SCFD1-220ENST00000556486 GUCY1A3Q02108 690 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 FOLH1Q04609 750 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 USP10Q14694 798 aaKnown RBP9.35□□□□□ -0.91
SCFD1-220ENST00000556486 ABRAXAS2Q15018 415 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 TRIP13Q15645 432 aaPredicted RBP9.35□□□□□ -0.91
SCFD1-220ENST00000556486 NSDHLQ15738 373 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 CAPN13Q6MZZ7 669 aaPredicted RBP9.35□□□□□ -0.91
SCFD1-220ENST00000556486 PAPD4Q6PIY7 484 aaKnown RBP9.35□□□□□ -0.91
SCFD1-220ENST00000556486 KIAA0408Q6ZU52 694 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 SLC26A11Q86WA9 606 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 HORMAD2Q8N7B1 307 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 TMEM178AQ8NBL3 297 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 MFSD9Q8NBP5 474 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 C2CD4AQ8NCU7 369 aaPredicted RBP9.35□□□□□ -0.91
SCFD1-220ENST00000556486 OR56A3Q8NH54 315 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 ELP5Q8TE02 316 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 SLC13A3Q8WWT9 602 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 OLFM1Q99784 485 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 GPATCH1Q9BRR8 931 aaKnown RBP9.35□□□□□ -0.91
SCFD1-220ENST00000556486 KCNJ16Q9NPI9 418 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 LZTFL1Q9NQ48 299 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 C20orf96Q9NUD7 363 aaPredicted RBP9.35□□□□□ -0.91
SCFD1-220ENST00000556486 ABCF3Q9NUQ8 709 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 TAS2R13Q9NYV9 303 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 PRR13Q9NZ81 148 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 HCN3Q9P1Z3 774 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 TRMT6Q9UJA5 497 aaKnown RBP9.35□□□□□ -0.91
SCFD1-220ENST00000556486 ADAMTS6Q9UKP5 1117 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 SH2B3Q9UQQ2 575 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 NAALAD2Q9Y3Q0 740 aa9.35□□□□□ -0.91
SCFD1-220ENST00000556486 FBN1P35555 2871 aaKnown RBP9.34□□□□□ -0.91
SCFD1-220ENST00000556486 TRBC2A0A5B9 178 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 FOXO6A8MYZ6 492 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 PROM1O43490 865 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 GALR3O60755 368 aaPredicted RBP9.34□□□□□ -0.91
SCFD1-220ENST00000556486 RDH16O75452 317 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 SLC25A12O75746 678 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 TTC4O95801 387 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 FHP07954 510 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 HOXD4P09016 255 aaPredicted RBP9.34□□□□□ -0.91
SCFD1-220ENST00000556486 JAK1P23458 1154 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 GABRB3P28472 473 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 CXCR5P32302 372 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 TRHRP34981 398 aaPredicted RBP9.34□□□□□ -0.91
SCFD1-220ENST00000556486 PTGS2P35354 604 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 MEOX1P50221 254 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 CCR8P51685 355 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 DGKQP52824 942 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 SLC26A5P58743 744 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 PMPCAQ10713 525 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 NAE1Q13564 534 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 PHKG1Q16816 387 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 SFT2D3Q587I9 215 aa9.34□□□□□ -0.91
SCFD1-220ENST00000556486 HSP90AA5PQ58FG0 334 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms