RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 H3F3CQ6NXT2 135 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 ZYG11AQ6WRX3 759 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 CRLF3Q8IUI8 442 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 SLC22A9Q8IVM8 553 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 C4orf33Q8N1A6 199 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 ZCCHC7Q8N3Z6 543 aaKnown RBP12.84□□□□□ -0.35
SHMT2-219ENST00000555563 EFCAB3Q8N7B9 438 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 CATSPER1Q8NEC5 780 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 NFAM1Q8NET5 270 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-219ENST00000555563 L3HYPDHQ96EM0 354 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 ZNF382Q96SR6 550 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 SERPINI1Q99574 410 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 NPAS2Q99743 824 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 PARD6BQ9BYG5 372 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 RNF32Q9H0A6 362 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 ELOVL6Q9H5J4 265 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 TRPS1Q9UHF7 1281 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 TEKT2Q9UIF3 430 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 ZNF225Q9UK10 706 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 PPT2Q9UMR5 302 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 SPACA6W5XKT8 324 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 MYOCOSA0A1B0GUC4 107 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 TLDC2A0PJX2 215 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 G3V2L1 256 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 TMPRSS11DO60235 418 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 PLIN3O60664 434 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 CTNSO60931 367 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 LDB3O75112 727 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 MYO1DO94832 1006 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 OR4F21O95013 312 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 SEMA3DO95025 777 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 MYL2P10916 166 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 KRT4P19013 534 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 IMPDH1P20839 514 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 CRHR1P34998 444 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 TNFSF10P50591 281 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 TNFRSF17Q02223 184 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 IFFO1Q0D2I5 559 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 TERF2Q15554 542 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 TCHHL1Q5QJ38 904 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-219ENST00000555563 ACER2Q5QJU3 275 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 GPRIN3Q6ZVF9 776 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 GPR180Q86V85 440 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 NUDT13Q86X67 352 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 BEST3Q8N1M1 668 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 RIBC1Q8N443 379 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-219ENST00000555563 SLC5A8Q8N695 610 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 ELP5Q8TE02 316 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 SNRNP40Q96DI7 357 aaKnown RBP12.83□□□□□ -0.36
SHMT2-219ENST00000555563 C12orf65Q9H3J6 166 aaKnown RBP12.83□□□□□ -0.36
SHMT2-219ENST00000555563 DDX31Q9H8H2 851 aaKnown RBP12.83□□□□□ -0.36
SHMT2-219ENST00000555563 ADAP2Q9NPF8 381 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 PNO1Q9NRX1 252 aaKnown RBP12.83□□□□□ -0.36
SHMT2-219ENST00000555563 FARSBQ9NSD9 589 aaKnown RBP12.83□□□□□ -0.36
SHMT2-219ENST00000555563 PSD3Q9NYI0 1048 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 MAP10Q9P2G4 905 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 PHF11Q9UIL8 331 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 ATG4BQ9Y4P1 393 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 MYO18BQ8IUG5 2567 aa12.83□□□□□ -0.36
SHMT2-219ENST00000555563 SPENQ96T58 3664 aaKnown RBP12.82□□□□□ -0.36
SHMT2-219ENST00000555563 SHANK1Q9Y566 2161 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 BLACEA4D250 179 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 COPEO14579 308 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 FGF17O60258 216 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 PRKRAO75569 313 aaKnown RBP12.82□□□□□ -0.36
SHMT2-219ENST00000555563 MLYCDO95822 493 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 PDYNP01213 254 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 GBAP04062 536 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 CCT5P48643 541 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 TAS2R50P59544 299 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 ID2Q02363 134 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 SLC18A2Q05940 514 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 STX4Q12846 297 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 LCP2Q13094 533 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 ELAVL1Q15717 326 aaKnown RBP12.82□□□□□ -0.36
SHMT2-219ENST00000555563 MEP1AQ16819 746 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 CCDC153Q494R4 210 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 C18orf63Q68DL7 685 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 MRM1Q6IN84 353 aaKnown RBP12.82□□□□□ -0.36
SHMT2-219ENST00000555563 ATCAYQ86WG3 371 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 MREGQ8N565 214 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 CISD2Q8N5K1 135 aaKnown RBP12.82□□□□□ -0.36
SHMT2-219ENST00000555563 CCNYL1Q8N7R7 359 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 CDYL2Q8N8U2 506 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 APCDD1LQ8NCL9 501 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 B3GNT7Q8NFL0 401 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 SELENOMQ8WWX9 145 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 HAS2Q92819 552 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 ANKRD9Q96BM1 317 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-219ENST00000555563 CCDC126Q96EE4 140 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 C19orf60Q96EN9 201 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 ZNF354BQ96LW1 612 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 HBEGFQ99075 208 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 MRPL1Q9BYD6 325 aaKnown RBP12.82□□□□□ -0.36
SHMT2-219ENST00000555563 GSTO2Q9H4Y5 243 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 ASF1BQ9NVP2 202 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 LYARQ9NX58 379 aaKnown RBP12.82□□□□□ -0.36
SHMT2-219ENST00000555563 STMN3Q9NZ72 180 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 LGALS13Q9UHV8 139 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 GRID1Q9ULK0 1009 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms