RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 RPUSD3Q6P087 351 aaKnown RBP19.16■□□□□ 0.66
VTI1B-205ENST00000555543 LCA5Q86VQ0 697 aa19.16■□□□□ 0.66
VTI1B-205ENST00000555543 SLC5A8Q8N695 610 aa19.16■□□□□ 0.66
VTI1B-205ENST00000555543 OR4F6Q8NGB9 312 aa19.16■□□□□ 0.66
VTI1B-205ENST00000555543 ACMSDQ8TDX5 336 aa19.16■□□□□ 0.66
VTI1B-205ENST00000555543 MTFMTQ96DP5 389 aaKnown RBP19.16■□□□□ 0.66
VTI1B-205ENST00000555543 CCDC77Q9BR77 488 aa19.16■□□□□ 0.66
VTI1B-205ENST00000555543 ANKRD10Q9NXR5 420 aa19.16■□□□□ 0.66
VTI1B-205ENST00000555543 ZNF223Q9UK11 482 aaPredicted RBP19.16■□□□□ 0.66
VTI1B-205ENST00000555543 SMIM23A6NLE4 172 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 FOXE1O00358 373 aaPredicted RBP19.15■□□□□ 0.66
VTI1B-205ENST00000555543 CTNSO60931 367 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 LDB3O75112 727 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 CBX6O95503 412 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 PTX3P26022 381 aaPredicted RBP19.15■□□□□ 0.66
VTI1B-205ENST00000555543 BSGP35613 385 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 HNRNPH2P55795 449 aaKnown RBP19.15■□□□□ 0.66
VTI1B-205ENST00000555543 TAS2R50P59544 299 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 HERVK_113P63132 956 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 ID2Q02363 134 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 SLAMF1Q13291 335 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 TUBA3CQ13748 450 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 TERF2Q15554 542 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 GGTA1PQ4G0N0 100 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 LETMD1Q6P1Q0 360 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 TUBA3EQ6PEY2 450 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 B3GNT7Q8NFL0 401 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 EPS8L3Q8TE67 593 aaKnown RBP19.15■□□□□ 0.66
VTI1B-205ENST00000555543 SIGLEC12Q96PQ1 595 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 TMEM237Q96Q45 408 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 TAAR6Q96RI8 345 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 CENPKQ9BS16 269 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 ERVK-6Q9BXR3 956 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 CDCP1Q9H5V8 836 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 ADAP2Q9NPF8 381 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 ZNF225Q9UK10 706 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 EMCNQ9ULC0 261 aa19.15■□□□□ 0.66
VTI1B-205ENST00000555543 PPIEQ9UNP9 301 aaKnown RBP19.15■□□□□ 0.66
VTI1B-205ENST00000555543 GABRR3A8MPY1 467 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 PRAMEF2O60811 474 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 PRKRAO75569 313 aaKnown RBP19.14■□□□□ 0.65
VTI1B-205ENST00000555543 TAC1P20366 129 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 CPN2P22792 545 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 CD96P40200 585 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 GPR143P51810 404 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 CUL3Q13618 768 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 UBAP2LQ14157 1087 aaKnown RBP19.14■□□□□ 0.65
VTI1B-205ENST00000555543 ESPL1Q14674 2120 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 UNC50Q53HI1 259 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 ZNF678Q5SXM1 525 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 ZNF468Q5VIY5 522 aaPredicted RBP19.14■□□□□ 0.65
VTI1B-205ENST00000555543 FRG2Q64ET8 278 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 SH2D5Q6ZV89 423 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 MILR1Q7Z6M3 343 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 RPS19BP1Q86WX3 136 aaKnown RBP19.14■□□□□ 0.65
VTI1B-205ENST00000555543 TDRPQ86YL5 185 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 LGI4Q8N135 537 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 ZCCHC7Q8N3Z6 543 aaKnown RBP19.14■□□□□ 0.65
VTI1B-205ENST00000555543 MDS2Q8NDY4 140 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 TRPC4APQ8TEL6 797 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.14■□□□□ 0.65
VTI1B-205ENST00000555543 NCLNQ969V3 563 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 ANKRD9Q96BM1 317 aaPredicted RBP19.14■□□□□ 0.65
VTI1B-205ENST00000555543 FRG2BQ96QU4 278 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 ALOXE3Q9BYJ1 711 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 PSD3Q9NYI0 1048 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 PPT2Q9UMR5 302 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 ATG4BQ9Y4P1 393 aa19.14■□□□□ 0.65
VTI1B-205ENST00000555543 UTP20O75691 2785 aaKnown RBP19.13■□□□□ 0.65
VTI1B-205ENST00000555543 A0A0A6YYD5 115 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 TRBV11-1A0A0K0K1C0 115 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 TMPRSS11DO60235 418 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 FGF17O60258 216 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 OTCP00480 354 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 IFNA16P05015 189 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 GSTA1P08263 222 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 ATP5F1P24539 256 aaPredicted RBP19.13■□□□□ 0.65
VTI1B-205ENST00000555543 TPP2P29144 1249 aaPredicted RBP19.13■□□□□ 0.65
VTI1B-205ENST00000555543 HSD17B3P37058 310 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 ARFIP1P53367 373 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 CLCQ05315 142 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 STX4Q12846 297 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 ELAVL1Q15717 326 aaKnown RBP19.13■□□□□ 0.65
VTI1B-205ENST00000555543 EIF2S3LQ2VIR3 472 aaKnown RBP19.13■□□□□ 0.65
VTI1B-205ENST00000555543 C18orf63Q68DL7 685 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 TTC19Q6DKK2 380 aaPredicted RBP19.13■□□□□ 0.65
VTI1B-205ENST00000555543 MRM1Q6IN84 353 aaKnown RBP19.13■□□□□ 0.65
VTI1B-205ENST00000555543 FAM180AQ6UWF9 173 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 GPR180Q86V85 440 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 FAM26EQ8N5C1 309 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 FAR1Q8WVX9 515 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 HES7Q9BYE0 225 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 DDX31Q9H8H2 851 aaKnown RBP19.13■□□□□ 0.65
VTI1B-205ENST00000555543 RRAGDQ9NQL2 400 aaPredicted RBP19.13■□□□□ 0.65
VTI1B-205ENST00000555543 AGPAT4Q9NRZ5 378 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 FARSBQ9NSD9 589 aaKnown RBP19.13■□□□□ 0.65
VTI1B-205ENST00000555543 ABI3Q9P2A4 366 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 SPACA6W5XKT8 324 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 DOPEY2Q9Y3R5 2298 aa19.13■□□□□ 0.65
VTI1B-205ENST00000555543 HIVEP3Q5T1R4 2406 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms