RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 REXO4Q9GZR2 422 aaKnown RBP13.72□□□□□ -0.21
SHMT2-208ENST00000553868 CHRNA10Q9GZZ6 450 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 EFCAB1Q9HAE3 211 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 MCM8Q9UJA3 840 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 PILRAQ9UKJ1 303 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 NDUFAF1Q9Y375 327 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 NAV3Q8IVL0 2385 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 A0A088AWK7 358 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 A0A0J9YVX5 310 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 LRIT2A6NDA9 550 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 CCDC154A6NI56 674 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 ZNF891A8MT65 544 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-208ENST00000553868 B2RBV5 119 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 ANGPT2O15123 496 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 GYG2O15488 501 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 CFLARO15519 480 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 SH3BGRLO75368 114 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 PVRP15151 417 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 ZNF10P21506 573 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-208ENST00000553868 HPCAL1P37235 193 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 NCALDP61601 193 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 UFM1P61960 85 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 ZNF763Q0D2J5 394 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 SQSTM1Q13501 440 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 ART3Q13508 389 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 RCAN2Q14206 197 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 CLPPQ16740 277 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-208ENST00000553868 DPY19L1Q2PZI1 675 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 ADPRMQ3LIE5 342 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 DNAL1Q4LDG9 190 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 COQ5Q5HYK3 327 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 TOR1AIP1Q5JTV8 583 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 PHF19Q5T6S3 580 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 FBXO42Q6P3S6 717 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 TRIM40Q6P9F5 258 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 BLOC1S3Q6QNY0 202 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 WDR74Q6RFH5 385 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-208ENST00000553868 GK5Q6ZS86 529 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 IKBIPQ70UQ0 350 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 SPRED1Q7Z699 444 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 EFCAB3Q8N7B9 438 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 OR2L5Q8NG80 312 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 CPT1CQ8TCG5 803 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 PROKR1Q8TCW9 393 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 GAL3ST3Q96A11 431 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 SPDL1Q96EA4 605 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 C11orf24Q96F05 449 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-208ENST00000553868 TSSK3Q96PN8 268 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 KCNC2Q96PR1 638 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 OR2A5Q96R48 311 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 F2RL3Q96RI0 385 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 PRPF18Q99633 342 aaKnown RBP13.71□□□□□ -0.21
SHMT2-208ENST00000553868 MAP3K3Q99759 626 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 EBPLQ9BY08 206 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 C1orf21Q9H246 121 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 LRMDAQ9H2I8 198 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 DLGAP4Q9Y2H0 992 aa13.71□□□□□ -0.21
SHMT2-208ENST00000553868 PCM1Q15154 2024 aa13.71□□□□□ -0.22
SHMT2-208ENST00000553868 MED13LQ71F56 2210 aa13.71□□□□□ -0.22
SHMT2-208ENST00000553868 MN1Q10571 1320 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-208ENST00000553868 CFAP73A6NFT4 308 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 SLC9B1P1A6NJY1 282 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 TTLL8A6PVC2 850 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 EFCAB7A8K855 629 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 SAP18O00422 153 aaKnown RBP13.7□□□□□ -0.22
SHMT2-208ENST00000553868 PLPP1O14494 284 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 ANKRD28O15084 1053 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 ZSCAN9O15535 394 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-208ENST00000553868 B4GAT1O43505 415 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 NRP2O60462 931 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 SRPX2O60687 465 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-208ENST00000553868 CTSVO60911 334 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 GUCY1B2O75343 617 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 RASSF9O75901 435 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 ZBTB11O95625 1053 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-208ENST00000553868 DDAH2O95865 285 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 IL6P05231 212 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 KRT16P08779 473 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 ST6GAL1P15907 406 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 SSR2P43308 183 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 CPA2P48052 419 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 ARL4DP49703 201 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 C21orf58P58505 322 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 PPP1CAP62136 330 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 TRA2BP62995 288 aaKnown RBP13.7□□□□□ -0.22
SHMT2-208ENST00000553868 DMTNQ08495 405 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 MRPL49Q13405 166 aaKnown RBP13.7□□□□□ -0.22
SHMT2-208ENST00000553868 PTGR1Q14914 329 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 AMZ1Q400G9 498 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 CCNYL2Q5T2Q4 361 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 FAM92BQ6ZTR7 304 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 KMT5CQ86Y97 462 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 FUNDC1Q8IVP5 155 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 ARHGAP24Q8N264 748 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 OR9I1Q8NGQ6 314 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 APOBEC4Q8WW27 367 aaKnown RBP13.7□□□□□ -0.22
SHMT2-208ENST00000553868 TM4SF19Q96DZ7 209 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 BTBD10Q9BSF8 475 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 TBCDQ9BTW9 1192 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 SLC6A16Q9GZN6 736 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms