RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 DNAJB7Q7Z6W7 309 aaPredicted RBP16.75■□□□□ 0.27
SYNE3-202ENST00000553340 RNF180Q86T96 592 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 KLHDC8AQ8IYD2 350 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 RASSF5Q8WWW0 418 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 SLC7A6Q92536 515 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 TMEM159Q96B96 161 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 PKP4Q99569 1192 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 SLA2Q9H6Q3 261 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 TRPV5Q9NQA5 729 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 GULP1Q9UBP9 304 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 LSM7Q9UK45 103 aaKnown RBP16.75■□□□□ 0.27
SYNE3-202ENST00000553340 TMEM202A6NGA9 273 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 IMPA1P29218 277 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 FEN1P39748 380 aaKnown RBP16.75■□□□□ 0.27
SYNE3-202ENST00000553340 PNLIPRP1P54315 467 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 HYAL2Q12891 473 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 ILKQ13418 452 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 PDE7AQ13946 482 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 DUSP7Q16829 419 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 TMEM201Q5SNT2 666 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 CASP12Q6UXS9 341 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 TMPRSS11BQ86T26 416 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 SLC30A8Q8IWU4 369 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 PROKR2Q8NFJ6 384 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 SCAMP4Q969E2 229 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 NEIL2Q969S2 332 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 TMEM121BQ9BXQ6 578 aaPredicted RBP16.75■□□□□ 0.27
SYNE3-202ENST00000553340 TRBV4-1A0A0J9YWV2 114 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 FAM25AB3EWG3 89 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 FAM25CB3EWG5 89 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 FAM25GB3EWG6 89 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 ABLIM3O94929 683 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 SLC10A3P09131 477 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 PRKAR2AP13861 404 aaKnown RBP16.74■□□□□ 0.27
SYNE3-202ENST00000553340 BDKRB1P46663 353 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 MLLT11Q13015 90 aaPredicted RBP16.74■□□□□ 0.27
SYNE3-202ENST00000553340 MPEG1Q2M385 716 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 TXNDC8Q6A555 127 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 C22orf39Q6P5X5 142 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 XKRXQ6PP77 449 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 SLCO4C1Q6ZQN7 724 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 NOXA1Q86UR1 476 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 NANOGP1Q8N7R0 232 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 FAM181AQ8N9Y4 354 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 FIBINQ8TAL6 211 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 FOXJ1Q92949 421 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 REV1Q9UBZ9 1251 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 NDOR1Q9UHB4 597 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 SNX11Q9Y5W9 270 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 WWP2O00308 870 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 MYL12BO14950 172 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 NDUFB5O43674 189 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 TPST2O60704 377 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 ALX3O95076 343 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 CDRT1O95170 752 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 RECKO95980 971 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 HBQ1P09105 142 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 TGM4P49221 684 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 DSTNP60981 165 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 MXD1Q05195 221 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 CAMK2BQ13554 666 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 GLYR1Q49A26 553 aaPredicted RBP16.74■□□□□ 0.27
SYNE3-202ENST00000553340 GPAT3Q53EU6 434 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 MPPE1Q53F39 396 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 PDZK1Q5T2W1 519 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 ERAP2Q6P179 960 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 ARMCX6Q7L4S7 300 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 SLC25A46Q96AG3 418 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 SAMD11Q96NU1 681 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 TMEM245Q9H330 911 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 FAM83DQ9H4H8 585 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 ABCB9Q9NP78 766 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 PLSCR3Q9NRY6 295 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 MGAT4BQ9UQ53 548 aa16.74■□□□□ 0.27
SYNE3-202ENST00000553340 A0A1W2PRB8 838 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 H3BN98 237 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 FFAR1O14842 300 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 HOXA2O43364 376 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 SOX14O95416 240 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 LIM2P55344 173 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 ZNF91Q05481 1191 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 PUM1Q14671 1186 aaKnown RBP eCLIP16.73■□□□□ 0.27
SYNE3-202ENST00000553340 REEP3Q6NUK4 255 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 PHC2Q8IXK0 858 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 VWA5B2Q8N398 1253 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 OR7G1Q8NGA0 311 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 GRPEL2Q8TAA5 225 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 C16orf78Q8WTQ4 265 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 RNF170Q96K19 258 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 ZFYVE19Q96K21 471 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 GDF15Q99988 308 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 CPEB1Q9BZB8 566 aaKnown RBP16.73■□□□□ 0.27
SYNE3-202ENST00000553340 RANGRFQ9HD47 186 aaPredicted RBP16.73■□□□□ 0.27
SYNE3-202ENST00000553340 NUFIP1Q9UHK0 495 aaKnown RBP16.73■□□□□ 0.27
SYNE3-202ENST00000553340 MAU2Q9Y6X3 613 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 FABP12A6NFH5 140 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 NOTOA8MTQ0 251 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 IL1AP01583 271 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 PREPP48147 710 aa16.73■□□□□ 0.27
SYNE3-202ENST00000553340 CHRNEQ04844 493 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms