RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 KLHL22Q53GT1 634 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 CMPK2Q5EBM0 449 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 ARHGEF16Q5VV41 709 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 FAM159AQ6UWV7 190 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 LSMEM2Q8N112 164 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 LRRC17Q8N6Y2 441 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 MINDY2Q8NBR6 621 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 OR5AP2Q8NGF4 316 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 OR6M1Q8NGM8 313 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 ZNF524Q96C55 264 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 ZNF274Q96GC6 653 aaPredicted RBP4.41□□□□□ -1.7
SCFD1-209ENST00000553280 RPGRIP1Q96KN7 1286 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 CXorf58Q96LI9 332 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 C2orf48Q96LS8 159 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 CTAGE1Q96RT6 745 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 FNDC4Q9H6D8 234 aaPredicted RBP4.41□□□□□ -1.7
SCFD1-209ENST00000553280 TMEM231Q9H6L2 316 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 COQ10BQ9H8M1 238 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 HPS4Q9NQG7 708 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 IL20RAQ9UHF4 553 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 C2CD2Q9Y426 696 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 STK36Q9NRP7 1315 aa4.41□□□□□ -1.7
SCFD1-209ENST00000553280 hCG_38984A0A1B0GV85 526 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 LMO7DNF2Z398 122 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 BMPR1BO00238 502 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 FGF19O95750 216 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 HIST1H2AGP0C0S8 130 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 FAM200BP0CF97 657 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 TPBGLP0DKB5 382 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 NCF1P14598 390 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 EZRP15311 586 aaKnown RBP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 GNSP15586 552 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 LEPRP48357 1165 aaKnown RBP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 DLX5P56178 289 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 BTG1P62324 171 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 SNX1Q13596 522 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 EFTUD2Q15029 972 aaKnown RBP eCLIP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 TAB1Q15750 504 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 WSCD2Q2TBF2 565 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 GTDC1Q4AE62 458 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 GPAT3Q53EU6 434 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 IL23RQ5VWK5 629 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 YRDCQ86U90 279 aaKnown RBP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 AMZ2Q86W34 360 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 CACUL1Q86Y37 369 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 LACC1Q8IV20 430 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 CCDC197Q8NCU1 140 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 OR5T2Q8NGG2 359 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 OR10V1Q8NGI7 309 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 C8orf46Q8TAG6 207 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 GPR148Q8TDV2 347 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 ARHGAP45Q92619 1136 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 HIST1H2ACQ93077 130 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 FUNDC2Q9BWH2 189 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 PAPOLGQ9BWT3 736 aaKnown RBP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 EGLN1Q9GZT9 426 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 S100A14Q9HCY8 104 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 ZNF71Q9NQZ8 489 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 TECRQ9NZ01 308 aaKnown RBP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 CGNQ9P2M7 1197 aaKnown RBP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 MRTO4Q9UKD2 239 aaKnown RBP4.4□□□□□ -1.71
SCFD1-209ENST00000553280 U3KQV3 271 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 RNF123Q5XPI4 1314 aa4.4□□□□□ -1.71
SCFD1-209ENST00000553280 IGHV4-4A0A075B6R2 117 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 YJEFN3A6XGL0 299 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 TCP10L2B9ZVM9 353 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 ARPC1BO15143 372 aaKnown RBP4.39□□□□□ -1.71
SCFD1-209ENST00000553280 CLDN3O15551 220 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 GRID2O43424 1007 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 PCDH7O60245 1069 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 SCGB2A1O75556 95 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 AK1P00568 194 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 IGHDP01880 384 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 PROS1P07225 676 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 CD48P09326 243 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 PRSS56P0CW18 603 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 RALAP11233 206 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 GPX3P22352 226 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 GLRA1P23415 457 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 TIMP3P35625 211 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 SLC6A8P48029 635 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 LIMK2P53671 638 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 XGP55808 180 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 LINC01547P58512 204 aaPredicted RBP4.39□□□□□ -1.71
SCFD1-209ENST00000553280 NLRP11P59045 1033 aaKnown RBP4.39□□□□□ -1.71
SCFD1-209ENST00000553280 EXOSC7Q15024 291 aaKnown RBP4.39□□□□□ -1.71
SCFD1-209ENST00000553280 ZNF718Q3SXZ3 478 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 ANKDD1AQ495B1 522 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 SPANXN4Q5MJ08 99 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 LDLRAP1Q5SW96 308 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 AFTPHQ6ULP2 937 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 Q6ZVQ6 151 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 BNIPLQ7Z465 357 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 DND1Q8IYX4 353 aaKnown RBP4.39□□□□□ -1.71
SCFD1-209ENST00000553280 SLC22A15Q8IZD6 547 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 DCLK2Q8N568 766 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 TMEM178AQ8NBL3 297 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 OR52B4Q8NGK2 314 aa4.39□□□□□ -1.71
SCFD1-209ENST00000553280 P3H4Q92791 437 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms