RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PLA2G15Q8NCC3 412 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 HASPINQ8TF76 798 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 AKAP1Q92667 903 aaKnown RBP eCLIP5.04□□□□□ -1.6
USP28-213ENST00000544967 HS6ST2Q96MM7 605 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 NEDD4LQ96PU5 975 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 COQ3Q9NZJ6 369 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 RAB23Q9ULC3 237 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 MAN2B2Q9Y2E5 1009 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 MFHAS1Q9Y4C4 1052 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 DOCK6Q96HP0 2047 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 A0A0B4J293 547 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 A0A0U1RQS6 177 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 A0A1W2PQ09 198 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ZNF840PA6NDX5 716 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 MPTX1A8MV57 137 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ZNF670-ZNF695F2Z2N8 137 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 CXCR6O00574 342 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 WNT9AO14904 365 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 TXNL1O43396 289 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 C9P02748 559 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 LCKP06239 509 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 NOS3P29474 1203 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ALDH4A1P30038 563 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 FMO4P31512 558 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 LSM3P62310 102 aaKnown RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 HSF2Q03933 536 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 CSTF3Q12996 717 aaKnown RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 SLC14A1Q13336 389 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 KIAA0040Q15053 153 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 SF3A2Q15428 464 aaKnown RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 PFKFB4Q16877 469 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 SLC25A52Q3SY17 297 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 LRIF1Q5T3J3 769 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 MEDAGQ5VYS4 303 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 LAIR1Q6GTX8 287 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ZNF549Q6P9A3 640 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 RANBP10Q6VN20 620 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 NPAS3Q8IXF0 933 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 TTC9BQ8N6N2 239 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ATAD1Q8NBU5 361 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 OR52H1Q8NGJ2 320 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 VANGL1Q8TAA9 524 aaPredicted RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 DNAJB14Q8TBM8 379 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 AP3S1Q92572 193 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 RBPMSQ93062 196 aaKnown RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 RNF31Q96EP0 1072 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 EAF1Q96JC9 268 aaPredicted RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 CLUHP3Q96NS8 147 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 TRIM62Q9BVG3 475 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 FBXO44Q9H4M3 255 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ISYNA1Q9NPH2 558 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 IFT46Q9NQC8 304 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 UBQLN2Q9UHD9 624 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ASB1Q9Y576 335 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 EML5Q05BV3 1969 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 A0A1W2PPH5 198 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ARRDC5A6NEK1 342 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 QSOX1O00391 747 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 AP3D1O14617 1153 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 SSX4O60224 188 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 BEST1O76090 585 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 CCNDBP1O95273 360 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 CCNYL3P0C7X3 344 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 PRKAR1AP10644 381 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ACPPP15309 386 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 FDXRP22570 491 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 KELP23276 732 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 CALCRP30988 508 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 FMO3P31513 532 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ADRA1AP35348 466 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ID4P47928 161 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 GZMMP51124 257 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 GEMP55040 296 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ITGA1P56199 1179 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 SH3BP2P78314 561 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 DHODHQ02127 395 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 MAP4K2Q12851 820 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 GRB7Q14451 532 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 PON2Q15165 354 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 BAK1Q16611 211 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 RUNDC3AQ59EK9 446 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 SPOUT1Q5T280 376 aaKnown RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 OR2T5Q6IEZ7 315 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 SCYL2Q6P3W7 929 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 TMEM81Q6P7N7 255 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 GPRIN3Q6ZVF9 776 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 HTR3DQ70Z44 454 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 SCD5Q86SK9 330 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ISCA2Q86U28 154 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 COMMD7Q86VX2 200 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 CYP4Z1Q86W10 505 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 P3H2Q8IVL5 708 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 CDH26Q8IXH8 852 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ZZZ3Q8IYH5 903 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 OR4F6Q8NGB9 312 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 GPR150Q8NGU9 434 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 OR2T29Q8NH02 315 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 WDR48Q8TAF3 677 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 SLC22A8Q8TCC7 542 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms