RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 LMNTD1Q8N9Z9 388 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 LINC01555Q8NAE3 123 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 MLKLQ8NB16 471 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 KCTD6Q8NC69 237 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 GLB1L3Q8NCI6 653 aaPredicted RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 NEK11Q8NG66 645 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 OR4K2Q8NGD2 314 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 OR2L8Q8NGY9 312 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SPATA22Q8NHS9 363 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SLC35G2Q8TBE7 412 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 ELP5Q8TE02 316 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 ELMO1Q92556 727 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SLCO2A1Q92959 643 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 RERGQ96A58 199 aaPredicted RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 DACT3Q96B18 629 aaPredicted RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 ZMYND19Q96E35 227 aaPredicted RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 AJUBAQ96IF1 538 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SPATA13Q96N96 652 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 FSD1LQ9BXM9 530 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 TRIM7Q9C029 511 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 DEFB127Q9H1M4 99 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 ZDHHC11Q9H8X9 412 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 L2HGDHQ9H9P8 463 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 GLOD4Q9HC38 313 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 NTMQ9P121 344 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 LPAR3Q9UBY5 353 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 NDRG3Q9UGV2 375 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 PLAGL1Q9UM63 463 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 PCDHA3Q9Y5H8 950 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 DUSP10Q9Y6W6 482 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 CSPG4Q6UVK1 2322 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 ZGRF1Q86YA3 2104 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 LOC105369274A0A096LPK9 316 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 A0A0A6YYC8 382 aaPredicted RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 LOC102723532A0A0G2JNH3 316 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 OR2A25A4D2G3 310 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 A8MV72 311 aaPredicted RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 H0YGG7 62 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 I3L1I5 382 aaPredicted RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 FFAR3O14843 346 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 GPR42O15529 346 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 BUD23O43709 281 aaKnown RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 HCN1O60741 890 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 NSA2O95478 260 aaKnown RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 TSPAN15O95858 294 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 FTLP02792 175 aaPredicted RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 STATHP02808 62 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 CD48P09326 243 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 OR56A5P0C7T3 313 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 TPBGLP0DKB5 382 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 GAAP10253 952 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 PAX1P15863 534 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 TCF4P15884 667 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 ZFXP17010 805 aaPredicted RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 CMPK1P30085 196 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 OPRM1P35372 400 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 TIMP3P35625 211 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 RFC3P40938 356 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 SSR1P43307 286 aaKnown RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 PTH2RP49190 550 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 EFNA3P52797 238 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 SESN2P58004 480 aaPredicted RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 MLF1P58340 268 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 ARF3P61204 181 aaPredicted RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 MPP1Q00013 466 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 KRTAP1-1Q07627 177 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 MPP3Q13368 585 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 TRIM14Q14142 442 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 ABRAXAS2Q15018 415 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 NSDHLQ15738 373 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 ETFDHQ16134 617 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 ZNF385BQ569K4 471 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 SFT2D3Q587I9 215 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 TCP11X2Q5H9J9 407 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 LRRC8BQ6P9F7 803 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 SUSD1Q6UWL2 747 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 LARP4Q71RC2 724 aaKnown RBP eCLIP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 TRILQ7L0X0 811 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 BZW1Q7L1Q6 419 aaKnown RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 TAX1BP1Q86VP1 789 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 LACC1Q8IV20 430 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 OR4N4Q8N0Y3 316 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 CYP4Z2PQ8N1L4 340 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 LIX1Q8N485 282 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 FAM109AQ8N4B1 249 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 RELL2Q8NC24 303 aaPredicted RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 PLPP5Q8NEB5 264 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 PIK3C3Q8NEB9 887 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 OR2L3Q8NG85 312 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 LINC01560Q8TB33 94 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 NAT14Q8WUY8 206 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 NRG4Q8WWG1 115 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 ROBO4Q8WZ75 1007 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 GFM2Q969S9 779 aaKnown RBP3.78□□□□□ -1.8
SNHG1-220ENST00000544550 NTNG2Q96CW9 530 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 OR1F2PQ96R84 312 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 VAT1Q99536 393 aa3.78□□□□□ -1.8
SNHG1-220ENST00000544550 SPATA25Q9BR10 227 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms