RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 A0A087X1B8 175 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 GSAPA4D1B5 854 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 OR5K3A6NET4 321 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 SMIM23A6NLE4 172 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 ARHGEF33A8MVX0 844 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TRIM49D1C9J1S8 452 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 D6RAR5 112 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TMX2-CTNND1H3BSU7 103 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 MATN2O00339 956 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 RASGRF2O14827 1237 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 SLC16A5O15375 505 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 KLK10O43240 276 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 BCAS2O75934 225 aaPredicted RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 SNRPAP09012 282 aaKnown RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CCDC166P0CW27 439 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 EGR1P18146 543 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 POLR2CP19387 275 aaPredicted RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 PGM1P36871 562 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CAPZBP47756 277 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 SLC6A9P48067 706 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 RAB28P51157 221 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CLDN6P56747 220 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 SOX8P57073 446 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 HTD2P86397 168 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CHRNEQ04844 493 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CBX3Q13185 183 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 SP140Q13342 867 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 SEC23BQ15437 767 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TAF1BQ53T94 588 aaPredicted RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 PHF19Q5T6S3 580 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 HLA-DQA1Q5Y7H0 255 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TMEM71Q6P5X7 295 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TMEM207Q6UWW9 146 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CMC1Q7Z7K0 106 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 OR4D9Q8NGE8 314 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 OR9A1PQ8NGU1 263 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 MTBPQ96DY7 904 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 PDLIM5Q96HC4 596 aaKnown RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TGM7Q96PF1 710 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 NUDT22Q9BRQ3 303 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 ADI1Q9BV57 179 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 DPH1Q9BZG8 443 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 STRADBQ9C0K7 418 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 PARVBQ9HBI1 364 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 MID1IP1Q9NPA3 183 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 HRASLS2Q9NWW9 162 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 OR6C2Q9NZP2 312 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 OGFRQ9NZT2 677 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 PSMC3IPQ9P2W1 217 aaPredicted RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CTNNAL1Q9UBT7 734 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CIDEBQ9UHD4 219 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 ICKQ9UPZ9 632 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 ACOT9Q9Y305 439 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 IGF2RP11717 2491 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 A0A096LPK6 155 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 PIPSLA2A3N6 862 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 C7orf72A4D263 438 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 FAM149AA5PLN7 773 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 NPEPPSL1A6NEC2 478 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 ZNF839A8K0R7 811 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 A8MU76 341 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 A8MVJ9 347 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 C2orf74A8MZ97 194 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 PYCARD-AS1I3L0S3 204 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 GFYI3L273 518 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 UBXN8O00124 270 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 MYO1CO00159 1063 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 BTN3A3O00478 584 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 CASC3O15234 703 aaKnown RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 CSO75390 466 aaKnown RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 RASSF9O75901 435 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 TSPAN12O95859 305 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 SHBGP04278 402 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 MPOP05164 745 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 CHRM5P08912 532 aaPredicted RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 ENO2P09104 434 aaPredicted RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 LTA4HP09960 611 aaKnown RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 TPBGLP0DKB5 382 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 MALP21145 153 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 PKLRP30613 574 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 CSF2RBP32927 897 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 HSD17B2P37059 387 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 GDNFP39905 211 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 PSMB10P40306 273 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 SLC26A3P40879 764 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 KIR2DL2P43627 348 aaPredicted RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 SLCO1A2P46721 670 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 INHBCP55103 352 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 ATP6V0D1P61421 351 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 CFHR1Q03591 330 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 TSTA3Q13630 321 aaPredicted RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 CSHL1Q14406 222 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 ISXQ2M1V0 245 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 CCSMST1Q4G0I0 132 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 ZNF628Q5EBL2 1059 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 DEPDC1Q5TB30 811 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 ANKS6Q68DC2 871 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 KLC3Q6P597 504 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 RGS9BPQ6ZS82 235 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms