RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 RGNQ15493 299 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 ZNF517Q6ZMY9 492 aaPredicted RBP12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 GPR65Q8IYL9 337 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 CPA6Q8N4T0 437 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 CLP1Q92989 425 aaKnown RBP12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 COQ8BQ96D53 544 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 TOX2Q96NM4 488 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 YME1L1Q96TA2 773 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 PHOX2BQ99453 314 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 TCF25Q9BQ70 676 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 IRF2BPLQ9H1B7 796 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 ABHD14A-ACY1A0A1B0GW23 586 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 ISPDA4D126 451 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 EFCAB10A6NFE3 127 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 K7ESM1 405 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 ARHGAP33O14559 1287 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 TPST2O60704 377 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 AP2A2O94973 939 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 C9P02748 559 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 CCL5P13501 91 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 HLA-EP13747 358 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 PRKCAP17252 672 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 MC1RQ01726 317 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 TMEM115Q12893 351 aaPredicted RBP12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 PPIGQ13427 754 aaKnown RBP eCLIP12.01□□□□□ -0.494e-6■■■■□ 19.4
SFSWAP-208ENST00000539506 CCDC85BQ15834 202 aaPredicted RBP12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 C10orf62Q5T681 223 aaPredicted RBP12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 FAHD1Q6P587 224 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 RFPL4BQ6ZWI9 263 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 LGI4Q8N135 537 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 OR56A3Q8NH54 315 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 ST6GAL2Q96JF0 529 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 NRTNQ99748 197 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 SLC30A2Q9BRI3 323 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 BARHL1Q9BZE3 327 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 SPNS1Q9H2V7 528 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 CCNB1IP1Q9NPC3 277 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 DNAJC27Q9NZQ0 273 aa12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 HELZP42694 1942 aaKnown RBP12.01□□□□□ -0.49
SFSWAP-208ENST00000539506 NOTCH4Q99466 2003 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 SPINT1O43278 529 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 PRMT3O60678 531 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 PTTG1O95997 202 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 SOD1P00441 154 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 CHRNB1P11230 501 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 RFX2P48378 723 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 LRRC74AQ0VAA2 488 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 FADDQ13158 208 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 KCNC3Q14003 757 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 NFE2L1Q14494 772 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 MPEG1Q2M385 716 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 CPTPQ5TA50 214 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 TMEM220Q6QAJ8 160 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 TMIGD1Q6UXZ0 262 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 SLCO4C1Q6ZQN7 724 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 LACC1Q8IV20 430 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 SLC34A3Q8N130 599 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 ZNF480Q8WV37 535 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 GLYATL1Q969I3 302 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 LRRC3BQ96PB8 259 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 TDP1Q9NUW8 608 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 MAP4K5Q9Y4K4 846 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 CFAP20Q9Y6A4 193 aaKnown RBP12□□□□□ -0.49
SFSWAP-208ENST00000539506 A0A1W2PQ09 198 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 SAGE2PA6NJ88 616 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 ZNF8P17098 575 aaPredicted RBP12□□□□□ -0.49
SFSWAP-208ENST00000539506 PRLHRP49683 370 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 ITGA1P56199 1179 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 MEF2AQ02078 507 aaPredicted RBP12□□□□□ -0.49
SFSWAP-208ENST00000539506 LIPIQ6XZB0 460 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 KIAA0907Q7Z7F0 614 aaPredicted RBP12□□□□□ -0.49
SFSWAP-208ENST00000539506 VN1R2Q8NFZ6 395 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 PCNPQ8WW12 178 aaKnown RBP12□□□□□ -0.49
SFSWAP-208ENST00000539506 MYDGFQ969H8 173 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 TMEM159Q96B96 161 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 OR2A14Q96R47 310 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 WRAP53Q9BUR4 548 aaKnown RBP12□□□□□ -0.49
SFSWAP-208ENST00000539506 ASPNQ9BXN1 380 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 RPS6KA6Q9UK32 745 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 YARS2Q9Y2Z4 477 aaKnown RBP12□□□□□ -0.49
SFSWAP-208ENST00000539506 LYVE1Q9Y5Y7 322 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 PTPRSQ13332 1948 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 AKR7A2O43488 359 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 CYP2A6P11509 494 aaPredicted RBP12□□□□□ -0.49
SFSWAP-208ENST00000539506 CXCR4P61073 352 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 TUBA1BP68363 451 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 HBA1P69905 142 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 VEZF1Q14119 521 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 SYTL3Q4VX76 610 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 ERAP2Q6P179 960 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 TUBA1AQ71U36 451 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 UBQLNLQ8IYU4 475 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 PUM2Q8TB72 1066 aaKnown RBP eCLIP12□□□□□ -0.499e-8■■■■■ 144.4
SFSWAP-208ENST00000539506 CIDECQ96AQ7 238 aaPredicted RBP12□□□□□ -0.49
SFSWAP-208ENST00000539506 HRASLS5Q96KN8 279 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 ZSCAN5AQ9BUG6 496 aa12□□□□□ -0.49
SFSWAP-208ENST00000539506 TSPAN11A1L157 253 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 MEIOCA2RUB1 952 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 NPPBP16860 134 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 SOX6P35712 828 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms