RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SLC25A16P16260 332 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 PPP3CBP16298 524 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 CHMP24386 653 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 FOXN2P32314 431 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 PCDH1Q08174 1060 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 KIF5AQ12840 1032 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 FOXF2Q12947 444 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 MSLNQ13421 630 aaPredicted RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 NRF1Q16656 503 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 ASTE1Q2TB18 679 aaPredicted RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 AFTPHQ6ULP2 937 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 LYPD8Q6UX82 237 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 DND1Q8IYX4 353 aaKnown RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 TBC1D19Q8N5T2 526 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 LRRC17Q8N6Y2 441 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 CEP112Q8N8E3 955 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 KCT2Q8NC54 265 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 AKAP1Q92667 903 aaKnown RBP eCLIP8.39□□□□□ -1.07
USP28-205ENST00000537706 GCDHQ92947 438 aaPredicted RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 WNT2BQ93097 391 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 ABTB1Q969K4 478 aaPredicted RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 MACROD1Q9BQ69 325 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 PIGQQ9BRB3 760 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 ZNF696Q9H7X3 374 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 NECTIN3Q9NQS3 549 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 RYDENQ9NUL5 291 aaKnown RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 CNIH4Q9P003 139 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 ZFATQ9P243 1243 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 CTTNBP2NLQ9P2B4 639 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 ZNF223Q9UK11 482 aaPredicted RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 ABCA1O95477 2261 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.38□□□□□ -1.07
USP28-205ENST00000537706 H0Y3Z8 333 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 OVOL3O00110 214 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 PJA2O43164 708 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 ALOX12P18054 663 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 CTNNA2P26232 953 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 LOXP28300 417 aaPredicted RBP8.38□□□□□ -1.07
USP28-205ENST00000537706 UGT2B10P36537 528 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 COMPP49747 757 aaPredicted RBP8.38□□□□□ -1.07
USP28-205ENST00000537706 HK2P52789 917 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 RGS1Q08116 209 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 FASTKD1Q53R41 847 aaKnown RBP8.38□□□□□ -1.07
USP28-205ENST00000537706 TBCELQ5QJ74 424 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 VASNQ6EMK4 673 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 CAPN13Q6MZZ7 669 aaPredicted RBP8.38□□□□□ -1.07
USP28-205ENST00000537706 SEZ6L2Q6UXD5 910 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 IL17RELQ6ZVW7 336 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 DAZLQ92904 295 aaKnown RBP8.38□□□□□ -1.07
USP28-205ENST00000537706 WDYHV1Q96HA8 205 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 MARK4Q96L34 752 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 LACRTQ9GZZ8 138 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 RHBGQ9H310 441 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 ALG2Q9H553 416 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 ARNT2Q9HBZ2 717 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 ADAP2Q9NPF8 381 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 MAPRE3Q9UPY8 281 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 CLCA3PQ9Y6N3 262 aa8.38□□□□□ -1.07
USP28-205ENST00000537706 USF3Q68DE3 2245 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 KRT87PA6NCN2 255 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 URADA6NGE7 173 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 IQCF5A8MTL0 148 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 PRKNO60260 465 aaPredicted RBP8.37□□□□□ -1.07
USP28-205ENST00000537706 CRHP06850 196 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 IGFBP5P24593 272 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 CDKN1AP38936 164 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 SNRPNP63162 240 aaKnown RBP8.37□□□□□ -1.07
USP28-205ENST00000537706 OLR1P78380 273 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 TOMM20Q15388 145 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 DEFB134Q4QY38 66 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 NHSL2Q5HYW2 709 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 ZNF550Q7Z398 422 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 P4HA3Q7Z4N8 544 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 LDB1Q86U70 411 aaPredicted RBP8.37□□□□□ -1.07
USP28-205ENST00000537706 KRT222Q8N1A0 295 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 ARIH2OSQ8N7S6 290 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 TRIM58Q8NG06 486 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 OR8K3Q8NH51 312 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 FBXW5Q969U6 566 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 ANKRD9Q96BM1 317 aaPredicted RBP8.37□□□□□ -1.07
USP28-205ENST00000537706 TM4SF19Q96DZ7 209 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 QKIQ96PU8 341 aaKnown RBP eCLIP8.37□□□□□ -1.07
USP28-205ENST00000537706 DOHHQ9BU89 302 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 ARGLU1Q9NWB6 273 aaPredicted RBP8.37□□□□□ -1.07
USP28-205ENST00000537706 DDX56Q9NY93 547 aaKnown RBP8.37□□□□□ -1.07
USP28-205ENST00000537706 ZNF148Q9UQR1 794 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 LIPT1Q9Y234 373 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 A0A0A6YYJ9 748 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 A0A1W2PP18 115 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 FAM234BA2RU67 622 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 OR51F1A6NGY5 319 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 LRRC14BA6NHZ5 514 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 SLCO1B7G3V0H7 640 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 MYO1CO00159 1063 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 PRMT5O14744 637 aaPredicted RBP8.37□□□□□ -1.07
USP28-205ENST00000537706 SSX4O60224 188 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 GAS8O95995 478 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 ACTL6AO96019 429 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 IGHV4-39P01824 125 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 IFNA16P05015 189 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms