RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 CYP4X1Q8N118 509 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 FAR2Q96K12 515 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 UBXN10Q96LJ8 280 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 TSNARE1Q96NA8 513 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 RUNDC3BQ96NL0 473 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 KCNC2Q96PR1 638 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 TBCDQ9BTW9 1192 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 EFCAB11Q9BUY7 163 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 TTTY12Q9BZ98 90 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 REXO4Q9GZR2 422 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 RHOJQ9H4E5 214 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 CNOT10Q9H9A5 744 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 HPF1Q9NWY4 346 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 PTBP2Q9UKA9 531 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 SNX12Q9UMY4 172 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 L3MBTL1Q9Y468 752 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 PSAT1Q9Y617 370 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 CLCA3PQ9Y6N3 262 aa10.39□□□□□ -0.75
CLSTN3-206ENST00000535668 PINLYPA6NC86 204 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 SYT5O00445 386 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 ERI3O43414 337 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 CTAG2O75638 210 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 OR6B1O95007 311 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 GLI4P10075 376 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 GABRA1P14867 456 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 FOSL1P15407 271 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 GALNSP34059 522 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 ELK3P41970 407 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 NUP107P57740 925 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 TAS2R39P59534 338 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 RNF4P78317 190 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 POU4F1Q01851 419 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 TGM3Q08188 693 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 MGAT5Q09328 741 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 PMPCAQ10713 525 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 LAPTM5Q13571 262 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 RBBP5Q15291 538 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 ZKSCAN8Q15776 578 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 KCTD19Q17RG1 926 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 ZNF791Q3KP31 576 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 TMEM35AQ53FP2 167 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 PIGGQ5H8A4 983 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 TOR1AIP1Q5JTV8 583 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 RIPPLY2Q5TAB7 128 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 TRIM40Q6P9F5 258 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 B3GNT6Q6ZMB0 384 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 UBE3DQ7Z6J8 389 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 LAS2Q8IYD9 372 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 LRRC25Q8N386 305 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 PDPRQ8NCN5 879 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 PAQR8Q8TEZ7 354 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 ANKRD49Q8WVL7 239 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 ALKBH8Q96BT7 664 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 MBD6Q96DN6 1003 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 PTCD3Q96EY7 689 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 POM121Q96HA1 1249 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 VPS39Q96JC1 886 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 SCYL1Q96KG9 808 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 PSD3Q9NYI0 1048 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 B4GALT7Q9UBV7 327 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 FBXW2Q9UKT8 454 aa10.38□□□□□ -0.75
CLSTN3-206ENST00000535668 JMJD1CQ15652 2540 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 TAPBPO15533 448 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 ZNHIT1O43257 154 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 FAM155BO75949 473 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 SEC31AO94979 1220 aaKnown RBP10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 SERPIND1P05546 499 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 EPORP19235 508 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 PPP2R1BP30154 601 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 DNAJA1P31689 397 aaKnown RBP10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 SOX3P41225 446 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 ZFP36L2P47974 494 aaKnown RBP10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 ATP6V0D1P61421 351 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 FOLH1Q04609 750 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 SLC13A2Q13183 592 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 SLBPQ14493 270 aaKnown RBP eCLIP10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 DAZAP2Q15038 168 aaPredicted RBP10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 PPP1R7Q15435 360 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 TSNQ15631 228 aaKnown RBP10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 SULT1C3Q6IMI6 304 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 LYPD8Q6UX82 237 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 CEP128Q6ZU80 1094 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 RPRMLQ8N4K4 120 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 TMEM251Q8N6I4 163 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 BBOF1Q8ND07 529 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 ZNF721Q8TF20 911 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 ASB15Q8WXK1 588 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 SARAFQ96BY9 339 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 ALOXE3Q9BYJ1 711 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 PNO1Q9NRX1 252 aaKnown RBP10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 SACM1LQ9NTJ5 587 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 MS4A12Q9NXJ0 267 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 CTNNAL1Q9UBT7 734 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 ADGRE2Q9UHX3 823 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 FOXD3Q9UJU5 478 aaPredicted RBP10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 ERVK-11Q9UQG0 969 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 ATG4BQ9Y4P1 393 aa10.37□□□□□ -0.75
CLSTN3-206ENST00000535668 TLN2Q9Y4G6 2542 aa10.36□□□□□ -0.75
CLSTN3-206ENST00000535668 A0A0G2JNJ9 132 aa10.36□□□□□ -0.75
CLSTN3-206ENST00000535668 FAM95CA0A1B0GW59 222 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms