RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 CSF3RQ99062 836 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 CCT7Q99832 543 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 PAIP2Q9BPZ3 127 aaKnown RBP13.61□□□□□ -0.23
CPSF1-206ENST00000531480 YIPF2Q9BWQ6 316 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 NSRP1Q9H0G5 558 aaKnown RBP13.61□□□□□ -0.23
CPSF1-206ENST00000531480 THAP1Q9NVV9 213 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 PHF11Q9UIL8 331 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 MCM8Q9UJA3 840 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 KCNMB2Q9Y691 235 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 TCRBV16S1A1N1A0A5B0 115 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 SYNDIG1LA6NDD5 238 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 FAM227AF5H4B4 570 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 SLC28A1O00337 649 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 CRCPO75575 148 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 HSPA4LO95757 839 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 CHEK2O96017 543 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 HEXBP07686 556 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 FAM58BPP0C7Q3 252 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 PRKAR1AP10644 381 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 HNRNPFP52597 415 aaKnown RBP13.6□□□□□ -0.23
CPSF1-206ENST00000531480 SOX8P57073 446 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 IGLV3-21P80748 117 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-206ENST00000531480 TNFRSF17Q02223 184 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 ATG16L1Q676U5 607 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 GPR180Q86V85 440 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 PRSS58Q8IYP2 241 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 C1orf52Q8N6N3 182 aaKnown RBP13.6□□□□□ -0.23
CPSF1-206ENST00000531480 ZNF781Q8N8C0 355 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 TMEM102Q8N9M5 508 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-206ENST00000531480 OR11G2Q8NGC1 345 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 OR2T11Q8NH01 316 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.6□□□□□ -0.238e-13■■□□□ 11.7
CPSF1-206ENST00000531480 MGARPQ8TDB4 240 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 TTC9Q92623 222 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 APIPQ96GX9 242 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 MESP1Q9BRJ9 268 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 ILKAPQ9H0C8 392 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-206ENST00000531480 MANSC1Q9H8J5 431 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 WDR70Q9NW82 654 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 P4HTMQ9NXG6 502 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 MRPS33Q9Y291 106 aaKnown RBP13.6□□□□□ -0.23
CPSF1-206ENST00000531480 ATG4BQ9Y4P1 393 aa13.6□□□□□ -0.23
CPSF1-206ENST00000531480 DOCK10Q96BY6 2186 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 A0A1W2PR48 441 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 OR2W5A6NFC9 320 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 TGFBR3LH3BV60 316 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 PSMD12O00232 456 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-206ENST00000531480 LSM1O15116 133 aaKnown RBP13.59□□□□□ -0.23
CPSF1-206ENST00000531480 PRMT3O60678 531 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 CTNSO60931 367 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 KLK1P06870 262 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 C8orf89P0DMQ9 161 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 COX6A1P12074 109 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 OTX2P32243 289 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 GSTM5P46439 218 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 RPL14P50914 215 aaKnown RBP13.59□□□□□ -0.23
CPSF1-206ENST00000531480 BTG2P78543 158 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 RHDQ02161 417 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 ATP1A4Q13733 1029 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 PCOLCEQ15113 449 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 MINDY4Q4G0A6 757 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 SCIMPQ6UWF3 145 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 ANKRD37Q7Z713 158 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 LRRC8CQ8TDW0 803 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 ZNF75CPQ92670 426 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-206ENST00000531480 MAGEB18Q96M61 343 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 WDR77Q9BQA1 342 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-206ENST00000531480 RBCK1Q9BYM8 510 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 ZNF700Q9H0M5 742 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 PTGDR2Q9Y5Y4 395 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 SPACA6W5XKT8 324 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 ATRXP46100 2492 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 IGSF10Q6WRI0 2623 aa13.59□□□□□ -0.23
CPSF1-206ENST00000531480 IGHV1-45A0A0A0MS14 117 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 EIF4E1BA6NMX2 242 aaKnown RBP13.58□□□□□ -0.24
CPSF1-206ENST00000531480 CLDN4O14493 209 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 PIP5K1BO14986 540 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 RGS14O43566 566 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 B4GALT2O60909 372 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 CDC123O75794 336 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-206ENST00000531480 CEACAM4O75871 244 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 HPP00738 406 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 GBAP04062 536 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 ATXN8OSP0DMR3 200 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 ACPPP15309 386 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 CPN2P22792 545 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 TIA1P31483 386 aaKnown RBP eCLIP13.58□□□□□ -0.24
CPSF1-206ENST00000531480 GABPB1Q06547 395 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-206ENST00000531480 ACSM2AQ08AH3 577 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 NSDHLQ15738 373 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 TBR1Q16650 682 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 LINC00303Q3SY05 128 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 DCAF10Q5QP82 559 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 CCNYL2Q5T2Q4 361 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 ACSM2BQ68CK6 577 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 CYP20A1Q6UW02 462 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 RGS9BPQ6ZS82 235 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 LANCL3Q6ZV70 420 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 LRRC34Q8IZ02 419 aa13.58□□□□□ -0.24
CPSF1-206ENST00000531480 FAM47BQ8NA70 645 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms