RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 LIMK2P53671 638 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 RAB8AP61006 207 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF844Q08AG5 666 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 TSNQ15631 228 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 NPTX1Q15818 432 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF765Q7L2R6 523 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 THAP3Q8WTV1 239 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 KIAA1143Q96AT1 154 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 RADILQ96JH8 1075 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 FMO2Q99518 471 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 GAL3ST1Q99999 423 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 MLXQ9UH92 298 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ASB4Q9Y574 426 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 SETXQ7Z333 2677 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ZCWPW2A0A1B0GU75 182 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 CDC14CA4D256 554 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 MROH6A6NGR9 719 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 C9orf172C9J069 976 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 S1PR4O95977 384 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 INHBAP08476 426 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 SLC2A4P14672 509 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 WT1P19544 449 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ETV1P50549 477 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 PTK6Q13882 451 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 HECTD2Q5U5R9 776 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 GALNT18Q6P9A2 607 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 LYPD8Q6UX82 237 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 TMPRSS11BQ86T26 416 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 MICU2Q8IYU8 434 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 CCDC116Q8IYX3 515 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 OR8H2Q8N162 312 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 CBARPQ8N350 705 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF740Q8NDX6 193 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 METTL6Q8TCB7 284 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 FAM131CQ96AQ9 280 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 C8orf44Q96CB5 159 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 OLFM1Q99784 485 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 CHST8Q9H2A9 424 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 PDE7BQ9NP56 450 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ARMC1Q9NVT9 282 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 WARS2Q9UGM6 360 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ACSL5Q9ULC5 683 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ZGRF1Q86YA3 2104 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 SCN8AQ9UQD0 1980 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ICE1Q9Y2F5 2266 aa7.52□□□□□ -1.2
LIMCH1-219ENST00000514096 TCRBV9S1A1TA0A576 114 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ARGFXA6NJG6 315 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ZNF749O43361 778 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 FKBP9O95302 570 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 S100A9P06702 114 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 KRT15P19012 456 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 GABRB3P28472 473 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 GNALP38405 381 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 RGS4P49798 205 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 PCBP4P57723 403 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 DLG1Q12959 904 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 SQLEQ14534 574 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TTLL9Q3SXZ7 439 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ZNF549Q6P9A3 640 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 RNF175Q8N4F7 328 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 KCT2Q8NC54 265 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 RIT1Q92963 219 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 VPS33AQ96AX1 596 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TBCDQ9BTW9 1192 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TSSK1BQ9BXA7 367 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 EPB41L1Q9H4G0 881 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 C12orf10Q9HB07 376 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 PKDREJQ9NTG1 2253 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 MUC22E2RYF6 1773 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TRBV23-1A0A0A0MS06 115 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 LRRC14BA6NHZ5 514 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 OR5K4A6NMS3 321 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ARHGEF33A8MVX0 844 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ALX3O95076 343 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TGDSO95455 350 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 KLK3P07288 261 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 CCNYL3P0C7X3 344 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 UGT2B7P16662 529 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 DNAJA1P31689 397 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 CAPZBP47756 277 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TOP3AQ13472 1001 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ART3Q13508 389 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ZDHHC20Q5W0Z9 365 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 CFAP77Q6ZQR2 320 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ZER1Q7Z7L7 766 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC38A9Q8NBW4 561 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 GALNT11Q8NCW6 608 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 OR6Y1Q8NGX8 325 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 LPGAT1Q92604 370 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 RAD51AP1Q96B01 352 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 MNTQ99583 582 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TIMM29Q9BSF4 260 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 CCDC106Q9BWC9 280 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TRIM55Q9BYV6 548 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TIGARQ9NQ88 270 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ANKRD10Q9NXR5 420 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 WWOXQ9NZC7 414 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 SNX7Q9UNH6 387 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ICKQ9UPZ9 632 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 VWA7Q9Y334 891 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms