RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 OR10R2Q8NGX6 335 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 KREMEN1Q96MU8 473 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 NPLQ9BXD5 320 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 NAALAD2Q9Y3Q0 740 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 MBD5Q9P267 1494 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 EEF1E1-BLOC1S5C9J1V9 151 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 RFXAPO00287 272 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 CILPO75339 1184 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 PDGFAP04085 211 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 SHMT1P34896 483 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 GFOD2Q3B7J2 385 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 IGFN1Q86VF2 1251 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 IRF2BP1Q8IU81 584 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 THAP4Q8WY91 577 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 MAL2Q969L2 176 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 SH3YL1Q96HL8 342 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 MROQ9BYG7 248 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 SEZ6LQ9BYH1 1024 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 CPQQ9Y646 472 aa10.83□□□□□ -0.68
LIMCH1-217ENST00000512946 ADAMTS13Q76LX8 1427 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 GPR89AB7ZAQ6 455 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 CDC7O00311 574 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 TLL1O43897 1013 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 DCNP07585 359 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 GPR89BP0CG08 455 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 RHCEP18577 417 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 SNRPD2P62316 118 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 SMAD3P84022 425 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 KCNJ8Q15842 424 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 RAB11BQ15907 218 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 AGAP7PQ5VUJ5 663 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 TMEM198Q66K66 360 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 DESI1Q6ICB0 168 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 RNF130Q86XS8 419 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 PAPD5Q8NDF8 572 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 OR6C4Q8NGE1 309 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 OR10G6Q8NH81 332 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 FCRL1Q96LA6 429 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 TRIB3Q96RU7 358 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 CNTNAP3Q9BZ76 1288 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 SLC19A3Q9BZV2 496 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 DERL2Q9GZP9 239 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 DEFB129Q9H1M3 183 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 MRM3Q9HC36 420 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 ERVK13-1Q9NX77 482 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 GHRLQ9UBU3 117 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 FBXW2Q9UKT8 454 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 PRR36Q9H6K5 1346 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 OR6C74A6NCV1 312 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 GRXCR2A6NFK2 248 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 H7C1Q1 480 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 TPST2O60704 377 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 AMHP03971 560 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 CNTN2Q02246 1040 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF33BQ06732 778 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 BTN1A1Q13410 526 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 GPR19Q15760 415 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 UBE2UQ5VVX9 321 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 MBLAC2Q68D91 279 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 CES5AQ6NT32 575 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 POMZP3Q6PJE2 187 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 SYT14Q8NB59 555 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 DCUN1D4Q92564 292 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 SPDEFO95238 335 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 NTSR2O95665 410 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 ELK4P28324 431 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 ITPK1Q13572 414 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 CARD16Q5EG05 197 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 ABHD13Q7L211 337 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 SGPP2Q8IWX5 399 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 LILRB2Q8N423 598 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 NLGN2Q8NFZ4 835 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 OR5H2Q8NGV7 314 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 MYOZ2Q9NPC6 264 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 EBF1Q9UH73 591 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 TMEM59LQ9UK28 342 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 SLC35F4A4IF30 521 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 C9JVG2 144 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 DLX3O60479 287 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 TGFB1P01137 390 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 AMY2AP04746 511 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 CREB1P16220 341 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 GPX6P59796 221 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 KEAP1Q14145 624 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 MFSD13AQ14CX5 517 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 DPYSL2Q16555 572 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 SLC39A4Q6P5W5 647 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 UNC5DQ6UXZ4 953 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 CEACAM20Q6UY09 585 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 OTOP3Q7RTS5 596 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 DPPA2Q7Z7J5 298 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 TMPRSS12Q86WS5 348 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 KCT2Q8NC54 265 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 C7orf43Q8WVR3 580 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 ADAMTS14Q8WXS8 1223 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 SMPDL3AQ92484 453 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 LRCH3Q96II8 777 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF587Q96SQ5 575 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 HSD17B14Q9BPX1 270 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 ASB6Q9NWX5 421 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms