RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PCK2Q16822 640 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 TEX35Q5T0J7 233 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 C6orf163Q5TEZ5 329 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 TTC19Q6DKK2 380 aaPredicted RBP1.73□□□□□ -2.13
NUP54-208ENST00000508604 ZNF544Q6NX49 715 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 IRGCQ6NXR0 463 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 RFWD3Q6PCD5 774 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 SASS6Q6UVJ0 657 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 DHRS11Q6UWP2 260 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 ZBTB49Q6ZSB9 765 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 CCDC80Q76M96 950 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 NUFIP2Q7Z417 695 aaKnown RBP1.73□□□□□ -2.13
NUP54-208ENST00000508604 TBC1D10CQ8IV04 446 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 MKXQ8IYA7 352 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 SLC22A18ASQ8N1D0 253 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 ARL6IP6Q8N6S5 226 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 LSMEM1Q8N8F7 131 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 DRAXINQ8NBI3 349 aaPredicted RBP1.73□□□□□ -2.13
NUP54-208ENST00000508604 XXYLT1Q8NBI6 393 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 ANKRD20A12PQ8NF67 263 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 CCDC26Q8TAB7 109 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 ZNF564Q8TBZ8 553 aaPredicted RBP1.73□□□□□ -2.13
NUP54-208ENST00000508604 PRPF31Q8WWY3 499 aaKnown RBP1.73□□□□□ -2.13
NUP54-208ENST00000508604 SEPT1Q8WYJ6 367 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 ST6GALNAC6Q969X2 333 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 JAKMIP2Q96AA8 810 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 SLCO4A1Q96BD0 722 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 PYCR2Q96C36 320 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 FAF2Q96CS3 445 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 CDHR1Q96JP9 859 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 ABHD1Q96SE0 405 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 BAG1Q99933 345 aaPredicted RBP1.73□□□□□ -2.13
NUP54-208ENST00000508604 PINK1Q9BXM7 581 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 SH3GLB2Q9NR46 395 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 HAO2Q9NYQ3 351 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 DBF4Q9UBU7 674 aaPredicted RBP1.73□□□□□ -2.13
NUP54-208ENST00000508604 PCSK1NQ9UHG2 260 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 TMCC3Q9ULS5 477 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 BARX2Q9UMQ3 279 aaPredicted RBP1.73□□□□□ -2.13
NUP54-208ENST00000508604 KDRP35968 1356 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 TNRQ92752 1358 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 PIK3R4Q99570 1358 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 A0A1W2PQ67 120 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 FRG2CA6NGY1 282 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 RPN1P04843 607 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 ATP5BP06576 529 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 CD59P13987 128 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 PGAM2P15259 253 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 CCNCP24863 283 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 PSMA3P25788 255 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 MSNP26038 577 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 RDXP35241 583 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 EIF2DP41214 584 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 TNFRSF4P43489 277 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 CLNS1AP54105 237 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 TLE4Q04727 773 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 LRRC63Q05C16 580 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 RBBP4Q09028 425 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 CHAF1BQ13112 559 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 CCL14Q16627 93 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 CNPY1Q3B7I2 92 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 RILPL1Q5EBL4 403 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 DNAJC21Q5F1R6 531 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 XKR4Q5GH76 650 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 CCDC158Q5M9N0 1113 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 NAA16Q6N069 864 aaPredicted RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 TRMT11Q7Z4G4 463 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 AMIGO1Q86WK6 493 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 FBXO16Q8IX29 292 aaPredicted RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 TAGAPQ8N103 731 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 CCDC89Q8N998 374 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 TBCKQ8TEA7 893 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 GANCQ8TET4 914 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 TAF4BQ92750 862 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 TMCO6Q96DC7 493 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 ERP27Q96DN0 273 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 VMP1Q96GC9 406 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 DHTKD1Q96HY7 919 aaPredicted RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 GSDMAQ96QA5 445 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 CRACR2AQ9BSW2 395 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 UTP14AQ9BVJ6 771 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 LIME1Q9H400 295 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 RPAP3Q9H6T3 665 aaPredicted RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 NMUR1Q9HB89 426 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 DNAJC4Q9NNZ3 241 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 DCAF16Q9NXF7 216 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 CPSF2Q9P2I0 782 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 ZMAT5Q9UDW3 170 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 XPO7Q9UIA9 1087 aaKnown RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 RPS6KA6Q9UK32 745 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 RAB26Q9ULW5 256 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 MOKQ9UQ07 419 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 ITM2BQ9Y287 266 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 ATP6V0A2Q9Y487 856 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 SNX8Q9Y5X2 465 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 NCAPD3P42695 1498 aa1.72□□□□□ -2.13
NUP54-208ENST00000508604 IBTKQ9P2D0 1353 aaPredicted RBP1.72□□□□□ -2.13
NUP54-208ENST00000508604 PASKQ96RG2 1323 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 PEG3Q9GZU2 1588 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 A0A1B0GUL7 405 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms