RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 TEX35Q5T0J7 233 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 PRAMEF7Q5VXH5 474 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 SNRNP48Q6IEG0 339 aaKnown RBP2.87□□□□□ -1.95
LSM6-205ENST00000507449 RAB12Q6IQ22 244 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 LCLAT1Q6UWP7 414 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 TOM1L2Q6ZVM7 507 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 ELMOD1Q8N336 334 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 ARL10Q8N8L6 244 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 CCDC197Q8NCU1 140 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 OR10G7Q8NGN6 311 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 OR4L1Q8NH43 312 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.87□□□□□ -1.95
LSM6-205ENST00000507449 GLYATL1Q969I3 302 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 SLCO4A1Q96BD0 722 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 MOCOSQ96EN8 888 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 CFAP36Q96G28 342 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 ZNF274Q96GC6 653 aaPredicted RBP2.87□□□□□ -1.95
LSM6-205ENST00000507449 PCED1BQ96HM7 432 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 C18orf12Q96KH6 178 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 TMEM237Q96Q45 408 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 AGPAT1Q99943 283 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 JPH2Q9BR39 696 aaPredicted RBP2.87□□□□□ -1.95
LSM6-205ENST00000507449 ZNF577Q9BSK1 485 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 PINK1Q9BXM7 581 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 GFRA4Q9GZZ7 299 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 WWP1Q9H0M0 922 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 UPF3AQ9H1J1 476 aaKnown RBP2.87□□□□□ -1.95
LSM6-205ENST00000507449 TMEM245Q9H330 911 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 DCLRE1BQ9H816 532 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 PIGVQ9NUD9 493 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 ZDHHC18Q9NUE0 388 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 DDX28Q9NUL7 540 aaKnown RBP2.87□□□□□ -1.95
LSM6-205ENST00000507449 TEX10Q9NXF1 929 aaPredicted RBP2.87□□□□□ -1.95
LSM6-205ENST00000507449 NDE1Q9NXR1 346 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 ERVK-19Q9WJR5 959 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 TDRKHQ9Y2W6 561 aaKnown RBP2.87□□□□□ -1.95
LSM6-205ENST00000507449 GPRASP1Q5JY77 1395 aa2.87□□□□□ -1.95
LSM6-205ENST00000507449 CCDC69A6NI79 296 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 SLC9B1P1A6NJY1 282 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 KRTAP16-1A8MUX0 517 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 CSDE1O75534 798 aaKnown RBP2.86□□□□□ -1.95
LSM6-205ENST00000507449 MTRF1O75570 445 aaKnown RBP2.86□□□□□ -1.95
LSM6-205ENST00000507449 CT45A8P0DMV1 189 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 CT45A9P0DMV2 189 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 UGT1A4P22310 534 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 AHCYP23526 432 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 ATP6V1E1P36543 226 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 PITPNBP48739 271 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 LUMP51884 338 aaPredicted RBP2.86□□□□□ -1.95
LSM6-205ENST00000507449 TMEM50BP56557 158 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 HERV-K104P63124 156 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 GALK2Q01415 458 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 RIGQ13278 110 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 FASTKD3Q14CZ7 662 aaKnown RBP2.86□□□□□ -1.95
LSM6-205ENST00000507449 FCN2Q15485 313 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 MLF2Q15773 248 aaPredicted RBP2.86□□□□□ -1.95
LSM6-205ENST00000507449 KNOP1Q1ED39 458 aaKnown RBP2.86□□□□□ -1.95
LSM6-205ENST00000507449 MTHFSDQ2M296 383 aaKnown RBP2.86□□□□□ -1.95
LSM6-205ENST00000507449 CT45A2Q5DJT8 189 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 CEP85LQ5SZL2 805 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 TRIM65Q6PJ69 517 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 LRRTM1Q86UE6 522 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 ITIH5Q86UX2 942 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 KCNMB4Q86W47 210 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 CARM1Q86X55 608 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 ZFAND4Q86XD8 727 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 Q8NBF4 154 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 OR8H1Q8NGG4 311 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 GANCQ8TET4 914 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 SSC4DQ8WTU2 575 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 GTF3AQ92664 365 aaKnown RBP2.86□□□□□ -1.95
LSM6-205ENST00000507449 EEF2KMTQ96G04 330 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 CXorf58Q96LI9 332 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 ZNF599Q96NL3 588 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 AGAP4Q96P64 663 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 PKP2Q99959 881 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 FAM213AQ9BRX8 229 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 GPN1Q9HCN4 374 aaPredicted RBP2.86□□□□□ -1.95
LSM6-205ENST00000507449 MED17Q9NVC6 651 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 ZHX2Q9Y6X8 837 aa2.86□□□□□ -1.95
LSM6-205ENST00000507449 SPAG9O60271 1321 aaKnown RBP2.86□□□□□ -1.95
LSM6-205ENST00000507449 IGHV4-30-2A0A087WSY4 118 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 TRBV5-4A0A0C4DH59 114 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 OR5H15A6NDH6 313 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 ZNF724A8MTY0 619 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 KPNA7A9QM74 516 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.85□□□□□ -1.95
LSM6-205ENST00000507449 TCP10L2B9ZVM9 353 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 K7EQG2 157 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 OGTO15294 1046 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 ZNF749O43361 778 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 IDH3BO43837 385 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 LRP3O75074 770 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 CSO75390 466 aaKnown RBP2.85□□□□□ -1.95
LSM6-205ENST00000507449 GMNNO75496 209 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 ZNF883P0CG24 379 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 AREGP15514 252 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 DPEP1P16444 411 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 STMN1P16949 149 aa2.85□□□□□ -1.95
LSM6-205ENST00000507449 TKTL1P51854 596 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms