RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 KCNE2Q9Y6J6 123 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 CLCA3PQ9Y6N3 262 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 DNHD1Q96M86 4753 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 A0A1B0GTL3 188 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 LRIT2A6NDA9 550 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 A6NNC1 897 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 CDC7O00311 574 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 CYR61O00622 381 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 B3GALT2O43825 422 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 TBX6O95947 436 aaPredicted RBP13.58□□□□□ -0.24
TRAF4-212ENST00000498540 FOSL1P15407 271 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 CERS1P27544 350 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 DGKQP52824 942 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 PLA2G16P53816 162 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 LIM2P55344 173 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 RNF4P78317 190 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 SLC10A1Q14973 349 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 C18orf21Q32NC0 220 aaPredicted RBP13.58□□□□□ -0.24
TRAF4-212ENST00000498540 BBS9Q3SYG4 887 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 FLYWCH1Q4VC44 716 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 RIPPLY2Q5TAB7 128 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 PAMR1Q6UXH9 720 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 SEM1Q6ZVN7 128 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 MORN4Q8NDC4 146 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 GOT1L1Q8NHS2 421 aaPredicted RBP13.58□□□□□ -0.24
TRAF4-212ENST00000498540 DAZLQ92904 295 aaKnown RBP13.58□□□□□ -0.24
TRAF4-212ENST00000498540 MAGOHBQ96A72 148 aaKnown RBP13.58□□□□□ -0.24
TRAF4-212ENST00000498540 SMR3AQ99954 134 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 EXO5Q9H790 373 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 B4GALT7Q9UBV7 327 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 CBLCQ9ULV8 474 aa13.58□□□□□ -0.24
TRAF4-212ENST00000498540 MRPS33Q9Y291 106 aaKnown RBP13.58□□□□□ -0.24
TRAF4-212ENST00000498540 NSD1Q96L73 2696 aaPredicted RBP13.58□□□□□ -0.24
TRAF4-212ENST00000498540 TRGV5A0A0B4J1U4 118 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 NPEPPSL1A6NEC2 478 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 P04436 131 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 C1GALT1C1LP0DN25 315 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 PIGAP37287 484 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 GDF5P43026 501 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 SLBPQ14493 270 aaKnown RBP eCLIP13.57□□□□□ -0.24
TRAF4-212ENST00000498540 MSS51Q4VC12 460 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 ADNP2Q6IQ32 1131 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 ADGRD1Q6QNK2 874 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 TMIGD1Q6UXZ0 262 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 SLCO4C1Q6ZQN7 724 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 Q71RC1 249 aaPredicted RBP13.57□□□□□ -0.24
TRAF4-212ENST00000498540 VN1R5Q7Z5H4 357 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 GALNT7Q86SF2 657 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 NAXEQ8NCW5 288 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 WFDC11Q8NEX6 87 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 OR14A16Q8NHC5 309 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 SLC2A12Q8TD20 617 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 MBD6Q96DN6 1003 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 CERS2Q96G23 380 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 SGCZQ96LD1 299 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 SH3GL2Q99962 352 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 ALOXE3Q9BYJ1 711 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 ZNF703Q9H7S9 590 aaPredicted RBP13.57□□□□□ -0.24
TRAF4-212ENST00000498540 PLAC1Q9HBJ0 212 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 VTI1BQ9UEU0 232 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 DAPP1Q9UN19 280 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 VWA7Q9Y334 891 aa13.57□□□□□ -0.24
TRAF4-212ENST00000498540 MPDZO75970 2070 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 A0A088AWK7 358 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 C17orf105B2RV13 164 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 KDM4EB2RXH2 506 aaPredicted RBP13.56□□□□□ -0.24
TRAF4-212ENST00000498540 FAM47E-STBD1D6RA91 191 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 SYT5O00445 386 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 HCN1O60741 890 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 CTNSO60931 367 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 WDR47O94967 919 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 FREM3P0C091 2139 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 RFPL3SP0C7P2 107 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 GABRA1P14867 456 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 ZNF37AP17032 561 aaPredicted RBP13.56□□□□□ -0.24
TRAF4-212ENST00000498540 ZNF10P21506 573 aaPredicted RBP13.56□□□□□ -0.24
TRAF4-212ENST00000498540 BMP5P22003 454 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 LTBQ06643 244 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 ADPRMQ3LIE5 342 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 SPANXN3Q5MJ09 141 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 RNASEH2BQ5TBB1 312 aaKnown RBP13.56□□□□□ -0.24
TRAF4-212ENST00000498540 FAM45BPQ6NSW5 357 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 TRIM40Q6P9F5 258 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 CCDC137Q6PK04 289 aaKnown RBP13.56□□□□□ -0.24
TRAF4-212ENST00000498540 OPN5Q6U736 354 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 IGDCC3Q8IVU1 814 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 PPIL6Q8IXY8 311 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 ULK2Q8IYT8 1036 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 TTLQ8NG68 377 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 OR2L5Q8NG80 312 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 OR8K3Q8NH51 312 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 GABPB2Q8TAK5 448 aaPredicted RBP13.56□□□□□ -0.24
TRAF4-212ENST00000498540 FAM45AQ8TCE6 357 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 FAM222BQ8WU58 562 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 PDLIM5Q96HC4 596 aaKnown RBP13.56□□□□□ -0.24
TRAF4-212ENST00000498540 MS4A14Q96JA4 679 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 SERINC2Q96SA4 455 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 EGFL8Q99944 293 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 REXO4Q9GZR2 422 aaKnown RBP13.56□□□□□ -0.24
TRAF4-212ENST00000498540 SLC6A15Q9H2J7 730 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms