RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 NPIPA5E9PKD4 350 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 CCL21O00585 134 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 PRKNO60260 465 aaPredicted RBP21.43■■□□□ 1.02
COL9A3-213ENST00000489045 ITGA10O75578 1167 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 HIST1H1TP22492 207 aaPredicted RBP21.43■■□□□ 1.02
COL9A3-213ENST00000489045 SSR2P43308 183 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 DDX39BQ13838 428 aaKnown RBP21.43■■□□□ 1.02
COL9A3-213ENST00000489045 AP5B1Q2VPB7 878 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 KHDRBS2Q5VWX1 349 aaKnown RBP21.43■■□□□ 1.02
COL9A3-213ENST00000489045 MYLK4Q86YV6 388 aaPredicted RBP21.43■■□□□ 1.02
COL9A3-213ENST00000489045 RELL1Q8IUW5 271 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 SIAH3Q8IW03 269 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 TMEM132CQ8N3T6 1108 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 TMEM156Q8N614 296 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 CPSF7Q8N684 471 aaKnown RBP21.43■■□□□ 1.02
COL9A3-213ENST00000489045 CMTM7Q96FZ5 175 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 CCDC120Q96HB5 630 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 GPR78Q96P69 363 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 ALOXE3Q9BYJ1 711 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 VPS11Q9H270 941 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 OR51B5Q9H339 312 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 CPSF2Q9P2I0 782 aaKnown RBP21.43■■□□□ 1.02
COL9A3-213ENST00000489045 SUCOQ9UBS9 1254 aaKnown RBP21.43■■□□□ 1.02
COL9A3-213ENST00000489045 NPIPA1Q9UND3 350 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 CLCA3PQ9Y6N3 262 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 SPACA6W5XKT8 324 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 GTF3C1Q12789 2109 aa21.43■■□□□ 1.02
COL9A3-213ENST00000489045 KLK8O60259 260 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 LDB3O75112 727 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 SCELO95171 688 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 ACSL3O95573 720 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 ZNF24P17028 368 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 ALDH18A1P54886 795 aaKnown RBP21.42■■□□□ 1.02
COL9A3-213ENST00000489045 STX4Q12846 297 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 KRTCAP3Q53RY4 240 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 KLC3Q6P597 504 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 CYP4Z2PQ8N1L4 340 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 HUS1BQ8NHY5 278 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 IFT81Q8WYA0 676 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 MAGED4Q96JG8 741 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 SORBS1Q9BX66 1292 aaKnown RBP21.42■■□□□ 1.02
COL9A3-213ENST00000489045 FUT8Q9BYC5 575 aa21.42■■□□□ 1.02
COL9A3-213ENST00000489045 ZFAND5O76080 213 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 CASP6P55212 293 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 ID2Q02363 134 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 C3AR1Q16581 482 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 TECRLQ5HYJ1 363 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 RNFT1Q5M7Z0 435 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 DEPDC1Q5TB30 811 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 LIPJQ5W064 366 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 C16orf47Q6ZP98 133 aaPredicted RBP21.41■■□□□ 1.02
COL9A3-213ENST00000489045 PLD6Q8N2A8 252 aaKnown RBP21.41■■□□□ 1.02
COL9A3-213ENST00000489045 PTPMT1Q8WUK0 201 aaPredicted RBP21.41■■□□□ 1.02
COL9A3-213ENST00000489045 SLC44A1Q8WWI5 657 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 DAZLQ92904 295 aaKnown RBP21.41■■□□□ 1.02
COL9A3-213ENST00000489045 FMO2Q99518 471 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 MTERF1Q99551 399 aaKnown RBP21.41■■□□□ 1.02
COL9A3-213ENST00000489045 ACTR8Q9H981 624 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 LIN28AQ9H9Z2 209 aaKnown RBP21.41■■□□□ 1.02
COL9A3-213ENST00000489045 DMRT3Q9NQL9 472 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 VTI1BQ9UEU0 232 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 ADGRE2Q9UHX3 823 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 TINAGQ9UJW2 476 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 KLF13Q9Y2Y9 288 aaPredicted RBP21.41■■□□□ 1.02
COL9A3-213ENST00000489045 PCNX1Q96RV3 2341 aa21.41■■□□□ 1.02
COL9A3-213ENST00000489045 ASNA1O43681 348 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 INHBAP08476 426 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 CPN2P22792 545 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 PIK3CBP42338 1070 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 MEOX1P50221 254 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 SSR4P51571 173 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 RAP1GDS1P52306 607 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 GTF2H2Q13888 395 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 SERTAD2Q14140 314 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 PCBP2Q15366 365 aaKnown RBP eCLIP21.4■■□□□ 1.022e-6■■■■□ 20.5
COL9A3-213ENST00000489045 OR4C11Q6IEV9 310 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 GTF2H2CQ6P1K8 395 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 GOLGA7Q7Z5G4 137 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 MORN4Q8NDC4 146 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 OR14A16Q8NHC5 309 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 ITLN2Q8WWU7 325 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-213ENST00000489045 SREK1Q8WXA9 508 aaKnown RBP21.4■■□□□ 1.02
COL9A3-213ENST00000489045 PAFAH2Q99487 392 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 TSPYL1Q9H0U9 437 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 ZNF358Q9NW07 568 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 ZNF835Q9Y2P0 537 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 YARS2Q9Y2Z4 477 aaKnown RBP21.4■■□□□ 1.02
COL9A3-213ENST00000489045 PCDHGA11Q9Y5H2 935 aa21.4■■□□□ 1.02
COL9A3-213ENST00000489045 NCOA6Q14686 2063 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-213ENST00000489045 TMEM200CA6NKL6 621 aa21.39■■□□□ 1.01
COL9A3-213ENST00000489045 C17orf105B2RV13 164 aa21.39■■□□□ 1.01
COL9A3-213ENST00000489045 PLPP1O14494 284 aa21.39■■□□□ 1.01
COL9A3-213ENST00000489045 SIX3O95343 332 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-213ENST00000489045 TNNI3P19429 210 aa21.39■■□□□ 1.01
COL9A3-213ENST00000489045 ECHS1P30084 290 aa21.39■■□□□ 1.01
COL9A3-213ENST00000489045 SLAMF1Q13291 335 aa21.39■■□□□ 1.01
COL9A3-213ENST00000489045 MTFR2Q6P444 385 aa21.39■■□□□ 1.01
COL9A3-213ENST00000489045 HSDL2Q6YN16 418 aa21.39■■□□□ 1.01
COL9A3-213ENST00000489045 MDGA2Q7Z553 956 aa21.39■■□□□ 1.01
COL9A3-213ENST00000489045 SULF2Q8IWU5 870 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms