RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 FAM220BPB1ANY3 271 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 OR1F1O43749 312 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 CHRM5P08912 532 aaPredicted RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 FURINP09958 794 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 NDUFS1P28331 727 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 BSGP35613 385 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 AFF3P51826 1226 aaKnown RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 ADARB1P78563 741 aaKnown RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 UBE3DQ7Z6J8 389 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 WDR5BQ86VZ2 330 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 ZC3H7AQ8IWR0 971 aaKnown RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 ADGRF3Q8IZF5 1079 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 CLEC4FQ8N1N0 589 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 DTWD2Q8NBA8 298 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 OR2T12Q8NG77 320 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 FLVCR1-AS1Q8TAF5 88 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 ADNPQ9H2P0 1102 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 SYNPO2LQ9H987 977 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 MRPS30Q9NP92 439 aaKnown RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 BTNL2Q9UIR0 455 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 AP3M1Q9Y2T2 418 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 MDC1Q14676 2089 aaKnown RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 PI4KAP42356 2102 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 CCDC88CQ9P219 2028 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 TRIM64CA6NLI5 447 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 B4DGG1 531 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 BOLA2-SMG1P6H3BVE0 249 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 RTCAO00442 366 aaKnown RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 BTN3A3O00478 584 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 ALBP02768 609 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 HOXB3P14651 431 aaPredicted RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 NME1P15531 152 aaKnown RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 PIGAP37287 484 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 BCL6P41182 706 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 BLKP51451 505 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 TAS2R50P59544 299 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 ABATP80404 500 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 GPR18Q14330 331 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 LAPTM4AQ15012 233 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 ZIC1Q15915 447 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 MPEG1Q2M385 716 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 AASDHQ4L235 1098 aaPredicted RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 WDR45BQ5MNZ6 344 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 KIAA1614Q5VZ46 1190 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 ZNF425Q6IV72 752 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 PATL1Q86TB9 770 aaKnown RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 IQCHQ86VS3 1027 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 AMIGO1Q86WK6 493 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 DCP2Q8IU60 420 aaKnown RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 MMP21Q8N119 569 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 PARP8Q8N3A8 854 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 PAPD5Q8NDF8 572 aaKnown RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 MIPOL1Q8TD10 442 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 SLC37A2Q8TED4 501 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 LCN9Q8WX39 176 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 PANX1Q96RD7 426 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 TMEM184CQ9NVA4 438 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 KLHL20Q9Y2M5 609 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 TMA7Q9Y2S6 64 aaKnown RBP11.57□□□□□ -0.56
HDAC6-230ENST00000488543 U3KQV3 271 aa11.57□□□□□ -0.56
HDAC6-230ENST00000488543 TTC36A6NLP5 189 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 HAT1O14929 419 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 NDUFS4O43181 175 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 CPSF4O95639 269 aaKnown RBP11.56□□□□□ -0.56
HDAC6-230ENST00000488543 ARSFP54793 590 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 C2orf80Q0P641 193 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 PLK5Q496M5 336 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 LYSMD4Q5XG99 296 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 PMS2CLQ68D20 193 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 ADCK2Q7Z695 626 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 MICU2Q8IYU8 434 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 FAM174AQ8TBP5 190 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 THAP11Q96EK4 314 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 BHLHE41Q9C0J9 482 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-230ENST00000488543 TOR3AQ9H497 397 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 OR6C2Q9NZP2 312 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 CPNE7Q9UBL6 633 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 SNX11Q9Y5W9 270 aa11.56□□□□□ -0.56
HDAC6-230ENST00000488543 ELOVL7A1L3X0 281 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 KDM1AO60341 852 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 CLEC3AO75596 197 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 ANXA6P08133 673 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 IL3P08700 152 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 AGXTP21549 392 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 MLLT10P55197 1068 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 C21orf59P57076 290 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 BNC1Q01954 994 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 LPAL2Q16609 132 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 MEP1AQ16819 746 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 DEFB133Q30KQ1 61 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 C4orf46Q504U0 113 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 USP51Q70EK9 711 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 TMEM179BQ7Z7N9 219 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 FNDC8Q8TC99 324 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 ZDHHC1Q8WTX9 485 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 DPH7Q9BTV6 452 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 SARGQ9BW04 601 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 GORASP2Q9H8Y8 452 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 AHSPQ9NZD4 102 aa11.55□□□□□ -0.56
HDAC6-230ENST00000488543 SH3BP4Q9P0V3 963 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms