RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 NCSTNQ92542 709 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 THAP11Q96EK4 314 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 FAM120BQ96EK7 910 aaKnown RBP13.47□□□□□ -0.25
CUX1-209ENST00000487284 AHCYL2Q96HN2 611 aaKnown RBP13.47□□□□□ -0.25
CUX1-209ENST00000487284 KCNC2Q96PR1 638 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 EFHD1Q9BUP0 239 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 RPF2Q9H7B2 306 aaKnown RBP13.47□□□□□ -0.25
CUX1-209ENST00000487284 PRDM7Q9NQW5 492 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 CCM2LQ9NUG4 571 aaPredicted RBP13.47□□□□□ -0.25
CUX1-209ENST00000487284 PILRAQ9UKJ1 303 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 LRRC42Q9Y546 428 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 FAM186AA6NE01 2351 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 A0A0J9YY10 115 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 ELOVL7A1L3X0 281 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 EVPLLA8MZ36 301 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 CLIC1O00299 241 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 ERI3O43414 337 aaKnown RBP13.46□□□□□ -0.25
CUX1-209ENST00000487284 UMPSP11172 480 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 PVRP15151 417 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 EFNA1P20827 205 aaPredicted RBP13.46□□□□□ -0.25
CUX1-209ENST00000487284 PPIBP23284 216 aaKnown RBP13.46□□□□□ -0.25
CUX1-209ENST00000487284 CD1CP29017 333 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 CSF2RBP32927 897 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 DUSP3P51452 185 aaPredicted RBP13.46□□□□□ -0.25
CUX1-209ENST00000487284 PLA2G16P53816 162 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 POLE2P56282 527 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 STXBP1P61764 594 aaKnown RBP13.46□□□□□ -0.25
CUX1-209ENST00000487284 NHLH1Q02575 133 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 CFHR1Q03591 330 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 HEPACAMQ14CZ8 416 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 PRSS53Q2L4Q9 553 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 MTX3Q5HYI7 312 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 GLYATQ6IB77 296 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 FBXO42Q6P3S6 717 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 TRIM40Q6P9F5 258 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 ZNF621Q6ZSS3 439 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 USP53Q70EK8 1073 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 ASPGQ86U10 573 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 SERPINA11Q86U17 422 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 TICAM1Q8IUC6 712 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 ADGRG5Q8IZF4 528 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 MMP21Q8N119 569 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 ZCCHC7Q8N3Z6 543 aaKnown RBP13.46□□□□□ -0.25
CUX1-209ENST00000487284 NATD1Q8N6N6 113 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 AMER3Q8N944 861 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 TMEM102Q8N9M5 508 aaPredicted RBP13.46□□□□□ -0.25
CUX1-209ENST00000487284 OR52E4Q8NGH9 312 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 TM4SF19Q96DZ7 209 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 REXO5Q96IC2 774 aaKnown RBP13.46□□□□□ -0.25
CUX1-209ENST00000487284 NSMCE2Q96MF7 247 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 OR2A5Q96R48 311 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 PKP2Q99959 881 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 TBCDQ9BTW9 1192 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 KLHL25Q9H0H3 589 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 EPB41L1Q9H4G0 881 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 GORASP2Q9H8Y8 452 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 COPS7BQ9H9Q2 264 aaPredicted RBP13.46□□□□□ -0.25
CUX1-209ENST00000487284 TEX10Q9NXF1 929 aaPredicted RBP13.46□□□□□ -0.25
CUX1-209ENST00000487284 ZNF282Q9UDV7 671 aaPredicted RBP13.46□□□□□ -0.25
CUX1-209ENST00000487284 FTSJ1Q9UET6 329 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 RAPGEFL1Q9UHV5 662 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 VPS4AQ9UN37 437 aa13.46□□□□□ -0.25
CUX1-209ENST00000487284 A0A0G2JN53 185 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 A0A1W2PQM1 296 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 KIF1CO43896 1103 aaKnown RBP13.45□□□□□ -0.26
CUX1-209ENST00000487284 PEX1O43933 1283 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 CTSVO60911 334 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 SCELO95171 688 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 STATHP02808 62 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 CAPNS1P04632 268 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 CKMT2P17540 419 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 DDX5P17844 614 aaKnown RBP13.45□□□□□ -0.26
CUX1-209ENST00000487284 HIST1H1TP22492 207 aaPredicted RBP13.45□□□□□ -0.26
CUX1-209ENST00000487284 PSMA4P25789 261 aaKnown RBP13.45□□□□□ -0.26
CUX1-209ENST00000487284 PEX2P28328 305 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 HBA1P69905 142 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 RGS1Q08116 209 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 GAB1Q13480 694 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 TRIP10Q15642 601 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 OGFRL1Q5TC84 451 aaPredicted RBP13.45□□□□□ -0.26
CUX1-209ENST00000487284 MRM1Q6IN84 353 aaKnown RBP13.45□□□□□ -0.26
CUX1-209ENST00000487284 FAM92BQ6ZTR7 304 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 RNF44Q7L0R7 432 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 ZNF551Q7Z340 670 aaPredicted RBP13.45□□□□□ -0.26
CUX1-209ENST00000487284 KBTBD2Q8IY47 623 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 PAPD5Q8NDF8 572 aaKnown RBP13.45□□□□□ -0.26
CUX1-209ENST00000487284 OR4A15Q8NGL6 344 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 BAHD1Q8TBE0 780 aaPredicted RBP13.45□□□□□ -0.26
CUX1-209ENST00000487284 ZFP90Q8TF47 636 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 GAL3ST3Q96A11 431 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 CIDECQ96AQ7 238 aaPredicted RBP13.45□□□□□ -0.26
CUX1-209ENST00000487284 TGM7Q96PF1 710 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 MAP3K3Q99759 626 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 MACROD1Q9BQ69 325 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 RAB33BQ9H082 229 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 VCX3BQ9H321 246 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 TPT1P8Q9HAU6 139 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 EPHA6Q9UF33 1036 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 KLHL3Q9UH77 587 aa13.45□□□□□ -0.26
CUX1-209ENST00000487284 ATXN7L1Q9ULK2 861 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms