RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 MGLLQ99685 303 aa15.81■□□□□ 0.12
COL7A1-210ENST00000487017 PCTPQ9UKL6 214 aa15.81■□□□□ 0.12
COL7A1-210ENST00000487017 TTC34A8MYJ7 566 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 B4DGG1 531 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 SNAPC5O75971 98 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 CELP19835 753 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 CD9P21926 228 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 RPS3P23396 243 aaKnown RBP eCLIP15.8■□□□□ 0.12
COL7A1-210ENST00000487017 PSMA6P60900 246 aaKnown RBP15.8■□□□□ 0.12
COL7A1-210ENST00000487017 PMS2P3Q13401 168 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 ZMYND11Q15326 602 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 SLC36A3Q495N2 470 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 ZNF776Q68DI1 518 aaPredicted RBP15.8■□□□□ 0.12
COL7A1-210ENST00000487017 ZNF101Q8IZC7 436 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 CCDC120Q96HB5 630 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 PDLIM7Q9NR12 457 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 ARMC1Q9NVT9 282 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 H7BY64 318 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 KIAA0513O60268 411 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 GSRP00390 522 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 KDM1BQ8NB78 822 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 SCAMP4Q969E2 229 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 TEPSINQ96N21 525 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 PRAP1Q96NZ9 151 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 DPH2Q9BQC3 489 aaPredicted RBP15.8■□□□□ 0.12
COL7A1-210ENST00000487017 ANKRD60Q9BZ19 345 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 ACTL8Q9H568 366 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 METTL8Q9H825 291 aaKnown RBP15.8■□□□□ 0.12
COL7A1-210ENST00000487017 TRAV6A0A075B6T7 132 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 TRIM64CA6NLI5 447 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 LEFTY1O75610 366 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 PRKCDQ05655 676 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 CD47Q08722 323 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 SGCBQ16585 318 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 LY6G5CQ5SRR4 150 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 GTF2IRD2BQ6EKJ0 949 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 SLC29A4Q7RTT9 530 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 GTF2IRD2Q86UP8 949 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 FOXRED2Q8IWF2 684 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 OR8J1Q8NGP2 316 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 SMG9Q9H0W8 520 aaKnown RBP15.8■□□□□ 0.12
COL7A1-210ENST00000487017 FBXL12Q9NXK8 326 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 GRHPRQ9UBQ7 328 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 VILLO15195 856 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 STSP08842 583 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 RHCEP18577 417 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 HYAL2Q12891 473 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 TRAM1Q15629 374 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 TBC1D25Q3MII6 688 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 CGB2Q6NT52 195 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 SAMD12Q8N8I0 201 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 GLYATL1Q969I3 302 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 MTMR10Q9NXD2 777 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 ABI3Q9P2A4 366 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 NUP50Q9UKX7 468 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 PCDHB14Q9Y5E9 798 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 NRXN3Q9Y4C0 1643 aa15.8■□□□□ 0.12
COL7A1-210ENST00000487017 BLOC1S5-TXNDC5H3BN57 136 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 AXIN1O15169 862 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 GDI1P31150 447 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 CD68P34810 354 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-210ENST00000487017 CDKN1CP49918 316 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-210ENST00000487017 MS4A2Q01362 244 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 LMAN2Q12907 356 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 NFATC3Q12968 1075 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 FAM189A2Q15884 450 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 UGT8Q16880 541 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 ANKRD13BQ86YJ7 626 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 A6NHS1 94 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 SCGB1D2O95969 90 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 FCER2P06734 321 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 GADD45AP24522 165 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 ZNF805Q5CZA5 627 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 INSL6Q9Y581 213 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 NPIPA5E9PKD4 350 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 FBP2O00757 339 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 PLGP00747 810 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-210ENST00000487017 GATMP50440 423 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 NRROSQ86YC3 692 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 ARNTL2Q8WYA1 636 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 THRSPQ92748 146 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 FUBP1Q96AE4 644 aaKnown RBP15.79■□□□□ 0.12
COL7A1-210ENST00000487017 DHRS4Q9BTZ2 278 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 NPIPA1Q9UND3 350 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 PCDHGB5Q9Y5G0 923 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 CICQ96RK0 1608 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-210ENST00000487017 MAGEA12P43365 314 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-210ENST00000487017 RDH8Q9NYR8 311 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 ACSL5Q9ULC5 683 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 SORBS2O94875 1100 aaKnown RBP15.79■□□□□ 0.12
COL7A1-210ENST00000487017 RCAN2Q14206 197 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 ASCC1Q8N9N2 400 aaKnown RBP15.79■□□□□ 0.12
COL7A1-210ENST00000487017 OR2T33Q8NG76 320 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 HPF1Q9NWY4 346 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 PCDHGB2Q9Y5G2 931 aa15.79■□□□□ 0.12
COL7A1-210ENST00000487017 SCAMP2O15127 329 aaKnown RBP15.78■□□□□ 0.12
COL7A1-210ENST00000487017 OXSR1O95747 527 aaPredicted RBP15.78■□□□□ 0.12
COL7A1-210ENST00000487017 IFNA21P01568 189 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 EIF5AL1Q6IS14 154 aaKnown RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms