RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ST6GALNAC4Q9H4F1 302 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 ACTL8Q9H568 366 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 MAGEF1Q9HAY2 307 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 XAB2Q9HCS7 855 aaKnown RBP5.04□□□□□ -1.6
USP40-213ENST00000483216 PANK4Q9NVE7 773 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 NDUFA13Q9P0J0 144 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 DBF4Q9UBU7 674 aaPredicted RBP5.04□□□□□ -1.6
USP40-213ENST00000483216 CIDEBQ9UHD4 219 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 HYOU1Q9Y4L1 999 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 LIPGQ9Y5X9 500 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 ADCY9O60503 1353 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 ABCC12Q96J65 1359 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 MED23Q9ULK4 1368 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 AFF2P51816 1311 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 ARID2Q68CP9 1835 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 A0A1B0GVL5 298 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 MEX3AA1L020 520 aaKnown RBP5.03□□□□□ -1.6
USP40-213ENST00000483216 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.03□□□□□ -1.6
USP40-213ENST00000483216 IFIT3O14879 490 aaKnown RBP5.03□□□□□ -1.6
USP40-213ENST00000483216 MGRN1O60291 552 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 MYL6BP14649 208 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 RPL35AP18077 110 aaKnown RBP5.03□□□□□ -1.6
USP40-213ENST00000483216 UGT1A4P22310 534 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 ANXA13P27216 316 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 CDC25CP30307 473 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 HNF4AP41235 474 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 FNTAP49354 379 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 CCNG1P51959 295 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 KRTAP10-12P60413 245 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 SGCGQ13326 291 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 PDIA5Q14554 519 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 OPCMLQ14982 345 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 NONOQ15233 471 aaKnown RBP eCLIP5.03□□□□□ -1.6
USP40-213ENST00000483216 PTGISQ16647 500 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 CCDC122Q5T0U0 273 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 KLHL10Q6JEL2 608 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 C8orf74Q6P047 294 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 GTSCR1Q86UQ5 136 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 NLRP14Q86W24 1093 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 CCDC197Q8NCU1 140 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 NCOA7Q8NI08 942 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 AENQ8WTP8 325 aaKnown RBP5.03□□□□□ -1.6
USP40-213ENST00000483216 ATP6V1G3Q96LB4 118 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 RUNDC3BQ96NL0 473 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 CCT8L2Q96SF2 557 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 FN3KQ9H479 309 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 SLC40A1Q9NP59 571 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 IL1RAPL2Q9NP60 686 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 NFKBIL1Q9UBC1 381 aaPredicted RBP5.03□□□□□ -1.6
USP40-213ENST00000483216 POLLQ9UGP5 575 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 RWDD2AQ9UIY3 292 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 COL16A1Q07092 1604 aaPredicted RBP5.03□□□□□ -1.6
USP40-213ENST00000483216 TNS3Q68CZ2 1445 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 COL18A1P39060 1754 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 SCN11AQ9UI33 1791 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 HEG1Q9ULI3 1381 aa5.03□□□□□ -1.6
USP40-213ENST00000483216 ABCB11O95342 1321 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 ZMYM6O95789 1325 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 SALL1Q9NSC2 1324 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 CCDC169A6NNP5 214 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 LRRIQ3A6PVS8 624 aaPredicted RBP5.02□□□□□ -1.61
USP40-213ENST00000483216 MPTX1A8MV57 137 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 E9PQ18 207 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 NDC80O14777 642 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 SMIM24O75264 130 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 RTN2O75298 545 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 PAEPP09466 180 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 PSMA3P25788 255 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 CAMK2DQ13557 499 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 LPAL2Q16609 132 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 BEND3Q5T5X7 828 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 ERN2Q76MJ5 926 aaKnown RBP5.02□□□□□ -1.61
USP40-213ENST00000483216 UNC5CLQ8IV45 518 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 CCDC65Q8IXS2 484 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 SLC35F6Q8N357 371 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 CCDC63Q8NA47 563 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 PRSS33Q8NF86 280 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 METTL21AQ8WXB1 218 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 GTF3AQ92664 365 aaKnown RBP5.02□□□□□ -1.61
USP40-213ENST00000483216 TAF4BQ92750 862 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 TSACCQ96A04 125 aaPredicted RBP5.02□□□□□ -1.61
USP40-213ENST00000483216 CCDC42Q96M95 316 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 SPATA33Q96N06 139 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 PKP2Q99959 881 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 KRT23Q9C075 422 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 NYXQ9GZU5 481 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 IQCGQ9H095 443 aaKnown RBP5.02□□□□□ -1.61
USP40-213ENST00000483216 SDCBP2Q9H190 292 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 UPF3AQ9H1J1 476 aaKnown RBP5.02□□□□□ -1.61
USP40-213ENST00000483216 MED20Q9H944 212 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 SPHK2Q9NRA0 654 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.02□□□□□ -1.61
USP40-213ENST00000483216 PAK5Q9P286 719 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 ELF5Q9UKW6 265 aaPredicted RBP5.02□□□□□ -1.61
USP40-213ENST00000483216 GMEB1Q9Y692 573 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 USH1CQ9Y6N9 552 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 CRYBG1Q9Y4K1 1723 aa5.02□□□□□ -1.61
USP40-213ENST00000483216 MRC1P22897 1456 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 ATP8B3O60423 1300 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 SYNRGQ9UMZ2 1314 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms