RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 DEFB126Q9BYW3 111 aa21.86■■□□□ 1.09
C9orf3-215ENST00000478473 OR51B5Q9H339 312 aa21.86■■□□□ 1.09
C9orf3-215ENST00000478473 MS4A12Q9NXJ0 267 aa21.86■■□□□ 1.09
C9orf3-215ENST00000478473 FETUBQ9UGM5 382 aa21.86■■□□□ 1.09
C9orf3-215ENST00000478473 TRIM49D1C9J1S8 452 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 POC1B-GALNT4F8VUJ3 575 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 FOXE1O00358 373 aaPredicted RBP21.85■■□□□ 1.09
C9orf3-215ENST00000478473 RTCAO00442 366 aaKnown RBP21.85■■□□□ 1.09
C9orf3-215ENST00000478473 SNRPAP09012 282 aaKnown RBP21.85■■□□□ 1.09
C9orf3-215ENST00000478473 PTX3P26022 381 aaPredicted RBP21.85■■□□□ 1.09
C9orf3-215ENST00000478473 MST1P26927 711 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 PPP2R1BP30154 601 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 HLCSP50747 726 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 SERTAD2Q14140 314 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 C10orf62Q5T681 223 aaPredicted RBP21.85■■□□□ 1.09
C9orf3-215ENST00000478473 ZNF468Q5VIY5 522 aaPredicted RBP21.85■■□□□ 1.09
C9orf3-215ENST00000478473 SPINK14Q6IE38 97 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 ADGRD1Q6QNK2 874 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 TMEM132CQ8N3T6 1108 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 PTGR2Q8N8N7 351 aaPredicted RBP21.85■■□□□ 1.09
C9orf3-215ENST00000478473 EIF1ADQ8N9N8 165 aaKnown RBP21.85■■□□□ 1.09
C9orf3-215ENST00000478473 TMEM178AQ8NBL3 297 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 RGMAQ96B86 450 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 C5orf34Q96MH7 638 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 MRPL57Q9BQC6 102 aaKnown RBP21.85■■□□□ 1.09
C9orf3-215ENST00000478473 C1QTNF3Q9BXJ4 246 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 LRFN1Q9P244 771 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 CPSF2Q9P2I0 782 aaKnown RBP21.85■■□□□ 1.09
C9orf3-215ENST00000478473 XPR1Q9UBH6 696 aa21.85■■□□□ 1.09
C9orf3-215ENST00000478473 A8MUA0 341 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 PLPP1O14494 284 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 OR7A17O14581 309 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 SP1P08047 785 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 SBK3P0C264 359 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 CYB561P49447 251 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 BIKQ13323 160 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 MRM1Q6IN84 353 aaKnown RBP21.84■■□□□ 1.09
C9orf3-215ENST00000478473 SLC25A25Q6KCM7 469 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 LCA5Q86VQ0 697 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 MORN4Q8NDC4 146 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 PTPMT1Q8WUK0 201 aaPredicted RBP21.84■■□□□ 1.09
C9orf3-215ENST00000478473 RELTQ969Z4 430 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 ANKRD9Q96BM1 317 aaPredicted RBP21.84■■□□□ 1.09
C9orf3-215ENST00000478473 MTBPQ96DY7 904 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 ALOXE3Q9BYJ1 711 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 ZBTB26Q9HCK0 441 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 PNO1Q9NRX1 252 aaKnown RBP21.84■■□□□ 1.09
C9orf3-215ENST00000478473 PLEKHB1Q9UF11 243 aaPredicted RBP21.84■■□□□ 1.09
C9orf3-215ENST00000478473 PCTPQ9UKL6 214 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 RNF11Q9Y3C5 154 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 SPACA6W5XKT8 324 aa21.84■■□□□ 1.09
C9orf3-215ENST00000478473 NAV2Q8IVL1 2488 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 TRBV11-1A0A0K0K1C0 115 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 EXOC1LA0A1B0GW35 172 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 RIPK2O43353 540 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 CLDN9O95484 217 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 EEF1DP29692 281 aaKnown RBP21.83■■□□□ 1.09
C9orf3-215ENST00000478473 SSR2P43308 183 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 ZNF800Q2TB10 664 aaPredicted RBP eCLIP21.83■■□□□ 1.09
C9orf3-215ENST00000478473 GGTA1PQ4G0N0 100 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 LGSNQ5TDP6 509 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 OR14A16Q8NHC5 309 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 THAP3Q8WTV1 239 aaPredicted RBP21.83■■□□□ 1.09
C9orf3-215ENST00000478473 DAZLQ92904 295 aaKnown RBP21.83■■□□□ 1.09
C9orf3-215ENST00000478473 NCLNQ969V3 563 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 FRMD6Q96NE9 622 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 MTERF1Q99551 399 aaKnown RBP21.83■■□□□ 1.09
C9orf3-215ENST00000478473 CENPKQ9BS16 269 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 MRPL46Q9H2W6 279 aaKnown RBP21.83■■□□□ 1.09
C9orf3-215ENST00000478473 DDX31Q9H8H2 851 aaKnown RBP21.83■■□□□ 1.09
C9orf3-215ENST00000478473 ANKRD10Q9NXR5 420 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 OSGIN2Q9Y236 505 aa21.83■■□□□ 1.09
C9orf3-215ENST00000478473 A0A1B0GUH1 482 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 TMEM200CA6NKL6 621 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 FCHO1O14526 889 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 NME2P1O60361 137 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 RPS17P08708 135 aaKnown RBP21.82■■□□□ 1.08
C9orf3-215ENST00000478473 NME2P22392 152 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 BSGP35613 385 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 RPS13P62277 151 aaKnown RBP21.82■■□□□ 1.08
C9orf3-215ENST00000478473 PHEXP78562 749 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 OC90Q02509 493 aaPredicted RBP21.82■■□□□ 1.08
C9orf3-215ENST00000478473 TRAF3Q13114 568 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 SLAMF1Q13291 335 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 ZRSR2Q15696 482 aaKnown RBP21.82■■□□□ 1.08
C9orf3-215ENST00000478473 CPSF6Q16630 551 aaKnown RBP eCLIP21.82■■□□□ 1.08
C9orf3-215ENST00000478473 RNF175Q8N4F7 328 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 OR52B6Q8NGF0 335 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 OR8K3Q8NH51 312 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 HES7Q9BYE0 225 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 NOL11Q9H8H0 719 aaKnown RBP21.82■■□□□ 1.08
C9orf3-215ENST00000478473 PHF11Q9UIL8 331 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 CLCA3PQ9Y6N3 262 aa21.82■■□□□ 1.08
C9orf3-215ENST00000478473 SMIM24O75264 130 aa21.81■■□□□ 1.08
C9orf3-215ENST00000478473 SLC25A12O75746 678 aa21.81■■□□□ 1.08
C9orf3-215ENST00000478473 ZFAND5O76080 213 aa21.81■■□□□ 1.08
C9orf3-215ENST00000478473 SEMA3DO95025 777 aa21.81■■□□□ 1.08
C9orf3-215ENST00000478473 STX4Q12846 297 aa21.81■■□□□ 1.08
C9orf3-215ENST00000478473 DDX39BQ13838 428 aaKnown RBP21.81■■□□□ 1.08
C9orf3-215ENST00000478473 GALNTL5Q7Z4T8 443 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms